Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04781 ATGCCTCGTAAAGTTAACTATGGAATTGATTACTATGATGACGATGACTACGAGGACTATGATGACTATGATTATGATGTTGAATCTGAAAAATATGGAGCAGGAGAAGGGCCTGATACAAAGCAAGAGACCATCAGGCCTGGAGTTTGGAAATGCTCCATTTGTACTTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGTGTTATACGTCATCCCGTGGTTAACAATGGAACTTCCAACAGTAACAAAACAGATCCTTTCAAATTTGACGTTCCATCCCCAGATGATGTGGTTTTTACTGGCCTACATTCTTCAAAAAAGGGTTTGAAAGACAAAGTTAAAAACTCTAAAGATTCCCAGCTTTCATCAAGCAGCAGAGAGAAGAAAGAACTTGCTGTAGAATCCAATGCTGAAAGTTTAGATAACCTATCATCCTTAATGCAAAGGAACAAGCAGGACAGTGCAGCCAAGAACAAGCTTTCCAAAAATGTAGAAATTAATCTCGAAACAATTGGTGAAACCTTAAACAGCTTATCATCATCTTTGCCAAAGAACAAAGGAGATAATGCAAATAGAATAAATTCTTCAAAAAATGGTACAAATGGTACCCGATCAGACAAAGAAAAGTCTGGTAGTTTGTCTGCACTCCCGAAAGTCGAAGAAAGTGATAAGCTTAGTTTGTCTTCTAACAAAGACGGAAAGTCTGAAAGTGCTTCCAGCAGTTCTACCCACATGGTTCTTGATGAAAGATCTGGAAATTCTGATAATACTAATGCTAAGGGACCTCATAAACAAGTTACTTACCAGCCAGAAAAGTGGATGCTCCCTCAACAGTCTGAAGATACGCTGACTCAGTTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCCGGTAGGTTATTACACCTATTGGGACGGATTTCCAAGAAAGATATGCACAAAAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACCATGACAGTAGCTGTGGCATATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTTATCCCAAACATGATTTCTGGAGCGACACAAGCCGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAGGGAGCATGCACAACTTATAAGGAGTTTTGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTAGCATTCTCAAAAGACCGTTTTGATTTTATAAGACATCAGCTGGGAACTTTTCTCCGCTCATGTGGTTTCAAAGATTCTTCTCTCTCATGGATTCCCTTGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACGCTCATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAATCGACTCACTACAACCTCCTACTAGAGAATTCGCAAAACCTCTGTTAATGCCGATATGTGATATCATCAAATCAACTGCGCAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTATTCGAAATGGAACAAAGGTATTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGTGACTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTTGCTGTAACGTTGCAAGGTGTTGATGGAAGTCATGTATTTTCTGGAGGTGTATTATGTCATCCTGACTTTCCTGTTGCAATTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTAGATGGTGCAAGTCCCATATTGGTCGGCGCTCAGTTAGAGTTTCATATACATCATGCAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAAACCGGTAAGGTGACCAAAAAGTCTCCACGCTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTCTGCGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAATTGCAGTTGGACTTGTGACAAGAATAATCGAAGAACAAGGTAGAAGAGACAATGGGCGGCTATGTAATTCTTGTTGA 2187 0.4037 MPRKVNYGIDYYDDDDYEDYDDYDYDVESEKYGAGEGPDTKQETIRPGVWKCSICTYDNDESMTSCDICGVIRHPVVNNGTSNSNKTDPFKFDVPSPDDVVFTGLHSSKKGLKDKVKNSKDSQLSSSSREKKELAVESNAESLDNLSSLMQRNKQDSAAKNKLSKNVEINLETIGETLNSLSSSLPKNKGDNANRINSSKNGTNGTRSDKEKSGSLSALPKVEESDKLSLSSNKDGKSESASSSSTHMVLDERSGNSDNTNAKGPHKQVTYQPEKWMLPQQSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGGKGQTREHAQLIRSFGVDHVIVAVNKMDAVAFSKDRFDFIRHQLGTFLRSCGFKDSSLSWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAIDSLQPPTREFAKPLLMPICDIIKSTAQGQVSACGKLEAGAIRNGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLQGVDGSHVFSGGVLCHPDFPVAIAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRIIEEQGRRDNGRLCNSC 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04781 728 FunFam Translation elongation factor EF-1 513 603 - -
Trre7g04781 728 Gene3D - 43 86 - -
Trre7g04781 728 Gene3D Translation factors 514 603 - -
Trre7g04781 728 Gene3D Translation factors 607 719 - -
Trre7g04781 728 MobiDBLite consensus disorder prediction 180 213 - -
Trre7g04781 728 ProSiteProfiles Zinc finger RanBP2 type profile. 46 75 IPR001876 -
Trre7g04781 728 SUPERFAMILY Translation proteins 508 603 IPR009000 -
Trre7g04781 728 FunFam Elongation factor 1 alpha-like protein 278 510 - -
Trre7g04781 728 PANTHER TRANSLATION FACTOR 284 712 - -
Trre7g04781 728 MobiDBLite consensus disorder prediction 111 138 - -
Trre7g04781 728 Pfam Elongation factor Tu GTP binding domain 289 505 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 609 713 IPR009001 -
Trre7g04781 728 Gene3D - 277 510 IPR027417 -
Trre7g04781 728 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 286 517 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 FunFam elongation factor 1-alpha isoform X4 607 716 - -
Trre7g04781 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 531 IPR027417 -
Trre7g04781 728 SUPERFAMILY Ran binding protein zinc finger-like 48 73 IPR036443 -
Trre7g04781 728 PRINTS GTP-binding elongation factor signature 369 379 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 PRINTS GTP-binding elongation factor signature 385 396 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 PRINTS GTP-binding elongation factor signature 349 357 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 PRINTS GTP-binding elongation factor signature 290 303 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 PRINTS GTP-binding elongation factor signature 430 439 IPR000795 GO:0003924|GO:0005525
Trre7g04781 728 CDD HBS1_C_III 604 712 - -
Trre7g04781 728 CDD EF1_alpha 290 509 - -
Trre7g04781 728 SMART zf_4 48 72 IPR001876 -
Trre7g04781 728 ProSitePatterns Zinc finger RanBP2-type signature. 50 69 IPR001876 -
Trre7g04781 728 MobiDBLite consensus disorder prediction 111 139 - -
Trre7g04781 728 Pfam Elongation factor Tu C-terminal domain 612 712 IPR004160 -
Trre7g04781 728 MobiDBLite consensus disorder prediction 180 268 - -
Trre7g04781 728 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04781 Trre-Chr7 55281716 55291645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04781 48 715 Eukaryotic Initiation Factors Gene Family AT5G10630 60.000 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04781 K14416 - gmx:100798594 1123.23