Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04779 ATGGGAATTCATGGTCTGTTACCGCTACTCAAATCCATAATGGTTCCAATTCACATCAAAGACCTTCACGGCTGTTCTGTCGCCATCGATACCTATTCTTGGCTCCACAAAGGCGCTCTTTCTTGCAGCACTGACCTCTGTAAAGGAATACCCACTTCTAGGCACATTGAGTATTGTATGCATAGAGTGAATCTGCTTCGCCATTATGGTGTTAAGCCGATTCTTGTATTTGATGGAGGTCTTTTACCAATGAAGATTGAACAAGAGAATAAGCGTGCAAGGTCTAGAAAGGATAACTTTGTACGTGCAGTTGAACACGAATCAAATGGAAATTCTTCAGCTGCGTATGAATGCTACCAGAAAGCTGTTGATATTTCACCTACGATTGCGCGAGAACTGATTCAGGTATTGAAGCAGGAGAATGTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCTCAATTGACATTCTTGGCAGTTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGGTTTAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGTATTAAAAGATTTAAAAGTTATGACAAGGTTATTAAGCACTTGAAATACAATGGTGTTTCTGTACCTCCCTTTTATGAAGAGTCATTCCGGAAGGCCATACTTACTTTCCAATATCAACGGGTTTATGATCCAGTTAGTGAAAATATTGTCCATTTGGCAAATATACCCGAGGATATTGATATAGCACAAGGAATAGCAGAAGGTGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAAAAGTTTGTTGCCAGATTGGAAATTGCAGGAACTAGTCAATTTAAAACACTCAATTCTGAGAGGGTGAAGAAAAGGATTGATCTGCCTGTGCAGAAGAATCTCTTGACCAAATATTTTTCCGCGGAAGGTTTTGCATCTCTTGAAGCAAAGAGGGAATTCAAAGCGCCTAGAATGTCACCTACTACTGCTAATCAAAGTACACTGATTTCCTCTTCTGCCAATTCCCTAGAACATCAGACTTTAGAAGCTGCTGCTTGTGAAACAATGAACTCTCCTGCATCCATAGTTGACCCAGAGAGTTGTGGCAGCGACTCTCCTCCTAATTACTATATTGAAAACCATTTTCCCACCAAAAGTCCAGAGCTTATAGAATCACAATATCACGGAGAGATGAAGGGAAGTCCTGATCATACAATACTGAGACAGCCCAAGCAGTCAATTCATAAACCTTGTCTGGGGTTACACAAAGATCACGAGCTCACAAATGTCCATAGCAAAGTCGAAGAAAAAACCAAGGAGACAAAAAGAAAGGTAATTGTAAGGAGTCCTTATTTTCAGCAGAAGCAAGTAGAAAAGAGTGCTAGTGATGAGAAACAGGAGCCGGTGTCCTCTGGCATCGTCATTGATGAAAGAAAAAATGCCATATATGGCGGAGATTTATGTAACAACCAATTGAAGACTAAAGACTTGAAAAGGAAGGTCTCCCCTAATGATAGTATTCAAAGTGAAAATTTGCAGGCCAGGCAAATGCATCCTACTTCATCTACTTATGATAATGGTTGCTCCGATCATAATGTCGAAGAAGAAAAATTTGGGACAAACATTTCCCATTTAGGCCATTATTCAGAAATAGCTGAGAAGTCTTTGGACAGATTTACCTCGGTAATATCGGCTTTTAAATATACCTCTGGCTCTCGTGTCAGTGGCCTCCGTGCTCCTCTGAAAGATGTCCGCAACATCCGTAATAATAGGCCAGCAGCTGTGGATATCAGCCAATTTGCATATGTGCCAAAACCAACAAAGACTAGAAGAGTAGCTCCTGATACTAACAACACTCGTAAAACTAGGCCAACAGCTGTGGACTTGAACCAATATGCATATGTGCCAAAACAAAGACTAGAAGAATAG 2097 0.4039 MGIHGLLPLLKSIMVPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKIEQENKRARSRKDNFVRAVEHESNGNSSAAYECYQKAVDISPTIARELIQVLKQENVQYIVAPYEADAQLTFLAVSRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELNFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVIKHLKYNGVSVPPFYEESFRKAILTFQYQRVYDPVSENIVHLANIPEDIDIAQGIAEGDLDPITKMPFEGEKFVARLEIAGTSQFKTLNSERVKKRIDLPVQKNLLTKYFSAEGFASLEAKREFKAPRMSPTTANQSTLISSSANSLEHQTLEAAACETMNSPASIVDPESCGSDSPPNYYIENHFPTKSPELIESQYHGEMKGSPDHTILRQPKQSIHKPCLGLHKDHELTNVHSKVEEKTKETKRKVIVRSPYFQQKQVEKSASDEKQEPVSSGIVIDERKNAIYGGDLCNNQLKTKDLKRKVSPNDSIQSENLQARQMHPTSSTYDNGCSDHNVEEEKFGTNISHLGHYSEIAEKSLDRFTSVISAFKYTSGSRVSGLRAPLKDVRNIRNNRPAAVDISQFAYVPKPTKTRRVAPDTNNTRKTRPTAVDLNQYAYVPKQRLEE 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04779 698 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 321 IPR036279 -
Trre7g04779 698 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Trre7g04779 698 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Trre7g04779 698 FunFam Exonuclease 1, putative 1 207 - -
Trre7g04779 698 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Trre7g04779 698 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Trre7g04779 698 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Trre7g04779 698 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Trre7g04779 698 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Trre7g04779 698 SMART xpgn3 1 99 IPR006085 GO:0004518
Trre7g04779 698 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Trre7g04779 698 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 432 IPR006084 -
Trre7g04779 698 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Trre7g04779 698 SMART xpgineu 138 213 IPR006086 GO:0004518
Trre7g04779 698 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Trre7g04779 698 FunFam exonuclease 1 209 281 - -
Trre7g04779 698 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Trre7g04779 698 Gene3D - 209 281 - -
Trre7g04779 698 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Trre7g04779 698 Gene3D - 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04779 Trre-Chr7 55271770 55277214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04779 1 264 Core DNA Replication Machinery Family AT5G26680 24.910 9.49e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04779 K10746 - gmx:100798062 822.772