Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04771 ATGAGTTTTCCAAGTGAATCCATGCCAGATTCTCCTCAAAGAAATTCAGCTTTGAAGATTGGAAGAGGGAAGATTGAGATCAAGCGAATCGAAAACACAACAAATCGTCAAGTTACTTTTTGTAAGCGTCGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTAATAGTCTTCTCGACTCGCGGCCGTCTCTACGAATATGCAAATAACAGTGTGAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATACTCAGTATTACCAGCAAGAAGCTGCCAAACTGCGAGTCCAAATCAGTAATTTGCAGAATCACAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAATGGTAAGGATCTCAAAAACCTTGAGGCTAAATTAGAGAAAGGAATTAGCCGAGTTCGCTCCAAGAAGAATGAAATGTTGTTTGCAGAACTTGAGTACATGCAGAAGAGGATATCAGAAAGTGAGAGGAGTAACCATAATGTTAATTTATTTCCTGGAGGCACAAACTTTGAATGTATGCAACCTCAACCTCAGCAGCAGTTCGACTCTCGCGGCTACTTTCAAGTGAATGAATTACAGCCGAATGATCAGTATGCTAGGCAAGACCAGATGTCTCTTCAATTTGTTTGA 705 0.4028 MSFPSESMPDSPQRNSALKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGAKSASESNTQYYQQEAAKLRVQISNLQNHNRQMMGEALSNMNGKDLKNLEAKLEKGISRVRSKKNEMLFAELEYMQKRISESERSNHNVNLFPGGTNFECMQPQPQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04771 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 SUPERFAMILY SRF-like 21 93 IPR036879 GO:0003677|GO:0046983
Trre7g04771 234 Coils Coil 113 133 - -
Trre7g04771 234 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 ProSiteProfiles K-box domain profile. 106 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g04771 234 Pfam K-box region 102 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g04771 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 187 - -
Trre7g04771 234 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Trre7g04771 234 Coils Coil 143 163 - -
Trre7g04771 234 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Trre7g04771 234 Gene3D - 32 103 IPR036879 GO:0003677|GO:0046983
Trre7g04771 234 CDD MADS_MEF2_like 21 95 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04771 Trre-Chr7 55223470 55227936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04771 16 234 MADS-box Gene Family AT3G58780 62.025 3.70e-97 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre7g04771 K-box 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04771 K09264 - gmx:732595 338.961