Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04770 ATGAGTTTTCCAAGTGAATCCATGCCAGATTCTCCTCAAAGAAATTCAGCTTTGAAGATTGGAAGAGGGAAGATTGAGATCAAGCGAATCGAAAACACAACAAATCGTCAAGTTACTTTTTGTAAGCGTCGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTAATAGTCTTCTCGACTCGCGGCCGTCTCTACGAATATGCAAATAACAGTGTGAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATACTCAGTATTACCAGCAAGAAGCTGCCAAACTGCGAGTCCAAATCAGTAATTTGCAGAATCACAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAATGGTAAGGATCTCAAAAACCTTGAGGCTAAATTAGAGAAAGGAATTAGCCGAGTTCGCTCCAAGAAGAATGAAATGTTGTTTGCAGAACTTGAGTACATGCAGAAGAGGGAGATAGAGTTGCATAATAGCAACCAAGTTCTTAGAGCAAAGATATCAGAAAGTGAGAGGAGTAACCATAATGTTAATTTATTTCCTGGAGGCACAAACTTTGAATGTATGCAACCTCAACCTCAGCAGCAGTTCGACTCTCGCGGCTACTTTCAAGTGAATGAATTACAGCCGAATGATCAGTATGCTAGGCAAGACCAGATGTCTCTTCAATTTGTTTGA 747 0.4016 MSFPSESMPDSPQRNSALKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGAKSASESNTQYYQQEAAKLRVQISNLQNHNRQMMGEALSNMNGKDLKNLEAKLEKGISRVRSKKNEMLFAELEYMQKREIELHNSNQVLRAKISESERSNHNVNLFPGGTNFECMQPQPQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04770 248 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 Coils Coil 113 133 - -
Trre7g04770 248 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 Gene3D - 32 103 IPR036879 GO:0003677|GO:0046983
Trre7g04770 248 Pfam K-box region 102 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g04770 248 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre7g04770 248 Coils Coil 143 163 - -
Trre7g04770 248 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 CDD MADS_MEF2_like 21 95 IPR033896 GO:0000977|GO:0045944
Trre7g04770 248 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Trre7g04770 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 201 - -
Trre7g04770 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Trre7g04770 248 SUPERFAMILY SRF-like 21 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04770 Trre-Chr7 55223470 55227936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04770 16 248 MADS-box Gene Family AT3G58780 65.401 2.13e-106 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre7g04770 K-box 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04770 K09264 - gmx:732595 371.703