Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04759 ATGGCTAGTATAACTGATGATGCCGTTTTAGATGTAAGCAAGGATCCTTCCCAAACATGTCAAGACTCTGACTCCTATGTCTCTGTTCCTTTCTTGCAAAAGTTAATAGCAGAGTTGGTGGGCACATATTTCTTGATATTTGCAGGATGTGCTTCAATTGTAGTGAACAAAAACAATGACAACGTGGTCACACTTCCTGGAATAGCAATTGTTTGGGGACTTGCTGTGGTGGTATTGGTTTACTCTCTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTTACTATTGCTTTTGCTACTACAAGGAGGTTTCCATTGTTACAGGTGCCAGCTTATATATCAGCTCAACTTCTGGGAGGTACACTTGCTAGTGGAACTCTAAAACTAATTTTCAGTGGCAATGATGATCAGTTTCCAGGAACAATTCCATCTGGTTCTTGCCTTCAAGCTTTTGCACTTGAATTCATAGTCACATTTTACCTTATGTTTGTTATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAGTTAGCTGGAATTGCAATTGGGTCTACATTATTGATTAATGTGATTATTTCAGGACCAATAACAGGAGCGTCGATGAACCCAGTTAGAAGCCTAGGACCGGCTTTTGTACACAATAAATACACAGGAATATGGGTATATATAGTGTCACCAATTTTGGGGGCTGTGGCCGGAACATGGGCTTATAATACTGTTAGATACACTAACAAGTCCGTTCGTGAGATTACCAAGAGTGCTTCCTTCCTCAAAGAAGCCGGGCGCGGTGGGCGCCAAGTAGTTTAA 813 0.417 MASITDDAVLDVSKDPSQTCQDSDSYVSVPFLQKLIAELVGTYFLIFAGCASIVVNKNNDNVVTLPGIAIVWGLAVVVLVYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGGTLASGTLKLIFSGNDDQFPGTIPSGSCLQAFALEFIVTFYLMFVISGVATDNRAIGELAGIAIGSTLLINVIISGPITGASMNPVRSLGPAFVHNKYTGIWVYIVSPILGAVAGTWAYNTVRYTNKSVREITKSASFLKEAGRGGRQVV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04759 270 SUPERFAMILY Aquaporin-like 27 252 IPR023271 -
Trre7g04759 270 CDD MIP 33 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 Pfam Major intrinsic protein 27 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 NCBIfam MIP family channel protein 37 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Trre7g04759 270 PANTHER AQUAPORIN NIP2-1 20 259 IPR034294 -
Trre7g04759 270 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre7g04759 270 Gene3D Glycerol uptake facilitator protein. 3 255 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04759 Trre-Chr7 55147190 55149617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04759 3 260 Major Intrinsic Protein MIP AT5G37810 53.788 1.28e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04759 K09874 - gmx:100813448 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04759 7 55147190 55149617 Trre3g00676 3 4668925 4671572 PCT