Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04714 ATGGATCCAACAACAAGCAAAGGTAGTTGTGAAATGTTGGATCATGTTGATAAAGGGGTTTATGAGAATTTGAGTCATTTGGTTGAAGGAGTTGCAACTGATTCAGGAGCTGGATGTAGCTTGGGCGGTGAAGATCGGAATTCAGAAGAGACTTGCAGCAATGATCTTGGATTGAATGAGGAGTTAAAGGAGAGATCTTTAGAAGATAAGGGTCAGAATCAGAATGTTGGTGTTGATCCCCGAAAAATCAACGATGAATTGCACCTTGTTGATCAAGGGACTAGTTATAATTCAAGTAATTCGGTTAATGGGGAAGCACTTGAGACCTGTGTTGTAGTAGTTTCTTCTGCTCAGGTTGAGTGTATTAATGGTGGAGATAATAGAAAATTGGAAGCTAAAACTAATGAATCGGGGCTGCACATGTTAACGATTAAAACACCTAAAGGGGTATCTGAAACTGATAAAAATTCATGTGTGATTGATATGAATTGTGGCAGTTGCAGAGATTTTAGTGAGAATTCGGATGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCGTTAGAAGCAACTGTTGTCGGAACTCCAAATAGTGTTAATAATGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAACTAGGCATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATATGCGGTGAAACAGCAAAAAATATTTCCGAAGTTACTGATAATGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGACAATGATAATACATCACGCCGCAGCTTGGTTGGGTGCTGGACCGGGCAGCCATTCTGTAACTTCTTGATGGCGTGCCTAGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTAAAGATGTTCTAG 936 0.4028 MDPTTSKGSCEMLDHVDKGVYENLSHLVEGVATDSGAGCSLGGEDRNSEETCSNDLGLNEELKERSLEDKGQNQNVGVDPRKINDELHLVDQGTSYNSSNSVNGEALETCVVVVSSAQVECINGGDNRKLEAKTNESGLHMLTIKTPKGVSETDKNSCVIDMNCGSCRDFSENSDGEMICRICHLASGQPLEATVVGTPNSVNNDDKTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNISEVTDNGFMEEWCESGFIDNDNTSRRSLVGCWTGQPFCNFLMACLVIAFVLPWFFRVKMF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04714 311 Pfam RING-variant domain 206 244 IPR011016 GO:0008270
Trre7g04714 311 SUPERFAMILY RING/U-box 176 247 - -
Trre7g04714 311 SMART ringv_2 179 245 IPR011016 GO:0008270
Trre7g04714 311 PANTHER ZINC FINGER, RING-CH-TYPE 70 311 - -
Trre7g04714 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 256 IPR013083 -
Trre7g04714 311 ProSiteProfiles Zinc finger RING-CH-type profile. 172 251 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04714 Trre-Chr7 54835810 54837646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04714 160 306 C3H Transcription Factor Family AT5G05830 39.869 1.64e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04714 - - gmx:100791129 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04714 7 54835810 54837646 Trre7g04714 7 54835810 54837646 ECH
Trre7g04714 7 54835810 54837646 Trre3g00639 3 4394656 4396391 PCT