Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04710 ATGAAACCCTTTTACATATTCTTGATTCTCCTAACCTTGTTTTCTTCAGTACAATCTTCATGCAAAACTAAAGACCAAAAATTAATTTCAAAAGCTTTCAAATCTGTCTCTGGCTTCCACTCTTCCAATTTTTTCCAAACAAGAATCTTGACATGTTCAGACTCTCATATCACCAAAATAATTCTTCCATCCAAAAATCTAACCGGAACAATTTCATGGGGTTACCTTAAAAACATGTCAAAGTTACAAATTCTTGATCTCTCTGAAAATTCTTTACAAGGCCATGTTCCAAGCTGGTTTTGGTCTAGTTTTTTATCATTATTTGAAGTGAATCTCTCAAGAAACAAATTTGGAGGAAGCATCATCAATAACACCTCGTTTTTAATTTCAACCATTCAAAAACTCAATCTCTCACACAACAGGTTCAATAACATAGTTCAACTTTCTAGCTTCCAAAACCTTAAAATCCTCGACCTTTCACACAACAACCTAAGAACACTTCCTTTAGGTTTTCAAAACCTTACCAAACTACAACATGTTGATCTTTCAAGCTGCAATCTCAAAGATAACATAAAACAGACAATTTCTTCTGTACACTCACTTCAGTACTTGGATTTATCAAACAACAATTTAACCGGTAATTTCCCTTCTGATTTTCCACCACTTAACAACCTTAAATTCCTCAACATTTCAAACAACAACTTCATCTATAACAACAACACTCCAAACCAAAATCAAAATCAAGTCATCTTTCATAGAAAACAAACCAAACCCAAATCAAAAAAATTGATTCTTGCAGTATGTTCTACACTTGCAACACTTGTTATAGCGATAATTTCCATCTGGGTAATCCTAATTATTCACAGAAAGAGGAAACAACGTTCTAAGAAGAAGAAATGGGCAATTTCATTACCGGTTATGATGAACACGATGAACACGAAAGTAGAGAAAACAGGGCCATTTGAATTTGAAACAGAGTCAGGTTCAACATGGGTTGCAGATGTAAAAGAACCAACATCTGCACCAGTAGTGATGTTTGAGAAGCCATTGATGAACTTCACCTTCAAGGATCTAATCATTGCCACGTCACATTTCGGGAAAGAATCACAGTTAGCAGAAGGAAGGTGTGGACCTGTGTATTGGGCTGTTTTACCTGGTGAAATCCACGTGGCGATTAAGGTTCTTGAACATGCGAGAGACGTTGATTATGATGACTCTGTTGCTATGTTCGTTGACTTGGCGAAGTTGAAACATCCTAATTTGTTGACTCTCTCTGGGTACTGTATTGCAGGTAAAGAGAAGCTAGTGCTATATGAGTTTATGGCAAACGGCGATTTAGGTCGATGGCTACATGAACTTCCAACCGGGGATACCAACGTCGAGGATTGGACTGACGACACATGGGAGTTCCAAACCGGCGTGGTTGAAGCATCCCCAAAAAAGATGGGTTGGTTGACACGCCACCGTATTGCGGTGGGGATAGCACGTGGCCTTGCATATCTTCACCATGCGAGTTCAAAACCTGTTGTGCATGGACACCTCGTTACCTCCAACATTTTGCTCACTGATAATTTTGAGCCTCGAATCTCCGATTTTGGACTGCAAATCAACTCGAGTTCCAATGGTGGCATTGAAGATGATGTGTACTGCTTTGGAGTGGTGTTGATGGAGCTACTTACCGGGAGGATCGGCACAACAGAGACAATTGTTGCAGTTAGAAAGGCACTGAGGGAGGAACAACATGTTAGAGTGCTTGATGAGAGGTTGCTACTCGAAGGCGACCCAATGGTGAGCGAGATGGTGGAGAGCCTCATAATCGCTTTTTTGTGCACGGCTGAGTCGCCTTCCAAGAGACCCACCATGCAACAAGTTTTGGGATTACTCAAAGATATTCATCCCCATGAACCATCATTCTAA 1917 0.3991 MKPFYIFLILLTLFSSVQSSCKTKDQKLISKAFKSVSGFHSSNFFQTRILTCSDSHITKIILPSKNLTGTISWGYLKNMSKLQILDLSENSLQGHVPSWFWSSFLSLFEVNLSRNKFGGSIINNTSFLISTIQKLNLSHNRFNNIVQLSSFQNLKILDLSHNNLRTLPLGFQNLTKLQHVDLSSCNLKDNIKQTISSVHSLQYLDLSNNNLTGNFPSDFPPLNNLKFLNISNNNFIYNNNTPNQNQNQVIFHRKQTKPKSKKLILAVCSTLATLVIAIISIWVILIIHRKRKQRSKKKKWAISLPVMMNTMNTKVEKTGPFEFETESGSTWVADVKEPTSAPVVMFEKPLMNFTFKDLIIATSHFGKESQLAEGRCGPVYWAVLPGEIHVAIKVLEHARDVDYDDSVAMFVDLAKLKHPNLLTLSGYCIAGKEKLVLYEFMANGDLGRWLHELPTGDTNVEDWTDDTWEFQTGVVEASPKKMGWLTRHRIAVGIARGLAYLHHASSKPVVHGHLVTSNILLTDNFEPRISDFGLQINSSSNGGIEDDVYCFGVVLMELLTGRIGTTETIVAVRKALREEQHVRVLDERLLLEGDPMVSEMVESLIIAFLCTAESPSKRPTMQQVLGLLKDIHPHEPSF 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04710 638 Gene3D Phosphorylase Kinase; domain 1 325 440 - -
Trre7g04710 638 Pfam Leucine rich repeat 131 187 IPR001611 GO:0005515
Trre7g04710 638 SUPERFAMILY Protein kinase-like (PK-like) 339 626 IPR011009 -
Trre7g04710 638 Gene3D Ribonuclease Inhibitor 16 129 IPR032675 -
Trre7g04710 638 Pfam Protein tyrosine and serine/threonine kinase 368 538 IPR001245 GO:0004672|GO:0006468
Trre7g04710 638 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 50 268 - -
Trre7g04710 638 ProSiteProfiles Protein kinase domain profile. 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04710 638 Gene3D Ribonuclease Inhibitor 130 277 IPR032675 -
Trre7g04710 638 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
Trre7g04710 638 Gene3D Transferase(Phosphotransferase) domain 1 540 636 - -
Trre7g04710 638 Gene3D Transferase(Phosphotransferase) domain 1 441 539 - -
Trre7g04710 638 SMART LRR_typ_2 198 221 IPR003591 -
Trre7g04710 638 SMART LRR_typ_2 151 173 IPR003591 -
Trre7g04710 638 SMART LRR_typ_2 79 102 IPR003591 -
Trre7g04710 638 SUPERFAMILY L domain-like 42 238 - -
Trre7g04710 638 Pfam Leucine Rich Repeat 200 219 IPR001611 GO:0005515
Trre7g04710 638 FunFam Calmodulin-binding receptor kinase CaMRLK 130 239 - -
Trre7g04710 638 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Trre7g04710 638 FunFam Putative LRR receptor-like serine/threonine-protein kinase 326 440 - -
Trre7g04710 638 PRINTS Leucine-rich repeat signature 154 167 - -
Trre7g04710 638 PRINTS Leucine-rich repeat signature 198 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04710 Trre-Chr7 54807002 54811040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04710 57 631 Receptor kinase-like Gene Family AT5G07280 31.100 1.26e-70 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trre7g04710 PK_Tyr_Ser-Thr 2.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04710 - - gmx:100809704 833.558