Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04690 ATGGCTATTTGGCTAAAAAACTTCATCCATGTGTTCTTGTTCTGCTTCTTAACTATAGTTGCAGTTGCAGAAACTAGTTCCCATGATGATGACCAATGTAAAGAATCAAGTTGTGATGGTATTCATGGACCATTCATAAGATTCCCATTCAGACTCAAAGGAAAACAACCAAAATGGTGTGGCTACAATAATTCCTGGTTTGAACTATACTGCACTGACACCAACCAAACACTGTTGGAACTCCCTTTTTCTTATAAAACCATCATCAAAACCATAGACTACACTTCACAAGTCATAACAGTTTCTTATCCTGAATTATGCCTTCACAAACAAATTCCTAATTTTGACATATCCTCATCTCCCTTTCAGTTCAACGATGACTTTGGACTCAAAAAATATGCTTTATTCAATTGTTCAGGGACTTCTCAGAGAAACACAGATAACATAATAACATCTGGAAACTTTTCTTGTCTAAATGTTCCGGGATTTGAAGTTATAGCAGTGAATTCGGAATCATCAATAATCAGGACACCCTTGCTATCCTGTACCAGAATCCAAAACCTTGTTTTGTTGCCTAATTCTTTGTTTAATAACAACGTTGACGCTGGTCTCAATTGGTTACAGCCTGATTGCAGAAACTGTGAACGAAAAGGTGGGAAATGCAAGGCCAAAAGAAACACATCTCAACACAAATTTGAATGTATCATTAAAGGTTCATCAAAAGGGAAAGTGAAAGTGATAGCTGGTGGAATAATAGGCCCATTTTGTCTGATAGTTGTTGGAGTCGCGGCATATTGTGTCTATGTAGTTTTCATTGAAAGGAAGCATTACATAAGAATCAAAAAGTTTTTGAAGGATTATAAATCTCTTAAGCCTTCCAGATACTCATATGGAGATATTAAAAGAATTACAAATCAGTTTAAAGAAGAACTGGGGCAAGGAGCTTTTGGTTCGGTCTTCAAAGGAAAGCTATCAAAGGAAGTTCAGGTAGCTGTTAAGGTCCTCAACACTTCAACGGGAAACGGCCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCAAATTCACCACGTCAACGTGGCTCACTTGGTTGGCTTTTGTGCAGACGGGAACAAACAAGCCTTGGTGTATGAATTTCTGCCAAAAGGTTCGTTGCAGAAATTCATATCATCTGCAGACAATAAAGATGTCTTTTTAGGTTGGGAAAGGCTACAACACATTTCTCTCGGTATAGCTAAGGGAATTGAGTATCTTCATCAAGGTTGCGATAAACGAATTCTCCATTTTGATATCAAACCTCATAATGTATTGCTAGATGACAATTTCACACCCAAAATTTCTGATTTTGGTTTGGCAAAACTTTGTTCCAAGGAAAAAAGTAAAGTGTCAATGATCACGGCTAGAGGCACTTTGGGCTACATTGCACCAGAGGTATTTTCCAGGAACTTTGGCAATGTATCCTATAAGTCAGACATTTATAGTTATGGAATGATGCTTCTTGAAATGGTTGGAGGAAGGAAAGTAACCGATGTCACGGCCGAAAACAGCAGCCAAGTTCACTATCCACAATGGATTTATAATCTTCTAGAGAACAATGAAGATATAAAAATCCATATTGAAGGAGAAGAAGACACTATAATTGCAAAGAAGCTATCAATTGTGGGACTTTGGTGCATTCAGTGGCATCCAGCGAATCGTCCGACCATGAAGGCCGTGGTTCAAATGCTGGAAGGAAATAGTGAGAAGTTAGAGATGCCACCTAATCCTTTTGCCTCTGCATCGACAACCAGAACAGGTGCTAGACATCTGAACTTGGAGCTAGATGTCATCTCAGAAATAGAGTGA 1845 0.3843 MAIWLKNFIHVFLFCFLTIVAVAETSSHDDDQCKESSCDGIHGPFIRFPFRLKGKQPKWCGYNNSWFELYCTDTNQTLLELPFSYKTIIKTIDYTSQVITVSYPELCLHKQIPNFDISSSPFQFNDDFGLKKYALFNCSGTSQRNTDNIITSGNFSCLNVPGFEVIAVNSESSIIRTPLLSCTRIQNLVLLPNSLFNNNVDAGLNWLQPDCRNCERKGGKCKAKRNTSQHKFECIIKGSSKGKVKVIAGGIIGPFCLIVVGVAAYCVYVVFIERKHYIRIKKFLKDYKSLKPSRYSYGDIKRITNQFKEELGQGAFGSVFKGKLSKEVQVAVKVLNTSTGNGQEFINEMEAMCQIHHVNVAHLVGFCADGNKQALVYEFLPKGSLQKFISSADNKDVFLGWERLQHISLGIAKGIEYLHQGCDKRILHFDIKPHNVLLDDNFTPKISDFGLAKLCSKEKSKVSMITARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMMLLEMVGGRKVTDVTAENSSQVHYPQWIYNLLENNEDIKIHIEGEEDTIIAKKLSIVGLWCIQWHPANRPTMKAVVQMLEGNSEKLEMPPNPFASASTTRTGARHLNLELDVISEIE 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04690 614 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Trre7g04690 614 Gene3D Transferase(Phosphotransferase) domain 1 380 586 - -
Trre7g04690 614 SUPERFAMILY Protein kinase-like (PK-like) 289 577 IPR011009 -
Trre7g04690 614 FunFam serine/threonine-protein kinase PBS1-like 273 379 - -
Trre7g04690 614 Pfam Protein kinase domain 307 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04690 614 Gene3D Phosphorylase Kinase; domain 1 269 379 - -
Trre7g04690 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Trre7g04690 614 SMART serkin_6 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04690 614 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Trre7g04690 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 274 593 IPR045874 GO:0004672
Trre7g04690 614 FunFam PR5-like receptor kinase 380 588 - -
Trre7g04690 614 ProSiteProfiles Protein kinase domain profile. 305 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04690 Trre-Chr7 54624968 54627248 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04690 210 598 Receptor kinase-like Gene Family AT1G66910 43.796 1.08e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre7g04690 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04690 - - tpra:123914140 1173.69