Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04680 ATGGCATCTCCTGGTGGAACATATTCTTCTGGTACAAGCTCTCTTCAAAACTCTGGATCTGGATCAGAGGATCTGCGGTTGAATATAACAGATCAAAAGAAGAGGAAGAGAATGCAATCAAATCGAGAATCAGCACGAAGATCAAGGATGAAGAAACAACAACACATGGAAGATCTTAGCAATCAAATTGAACAGTTGAAAAAAGAGAATAATCAAATAAGCACAAATGTTGGTGTAACTACTCAGATGTACCTGAACGTTGAATCTGAGAATGAAATTCTTAGGGTTCAAATGGCTGAATTGAGTAACAGATTGCAATCTCTTAATGATATTATTCATTGCATTGAATCAAGTAATTCAATGTTTCAAGAAACTGATCAATTGTTCAATGATTGTGGATTTTTGGTGGACAATTGGAACACTTTTCCTATTATTAATCAACCAATCATGGCATCTAATGACATGTTGATGTATTGA 477 0.348 MASPGGTYSSGTSSLQNSGSGSEDLRLNITDQKKRKRMQSNRESARRSRMKKQQHMEDLSNQIEQLKKENNQISTNVGVTTQMYLNVESENEILRVQMAELSNRLQSLNDIIHCIESSNSMFQETDQLFNDCGFLVDNWNTFPIINQPIMASNDMLMY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04680 158 MobiDBLite consensus disorder prediction 27 64 - -
Trre7g04680 158 Coils Coil 84 111 - -
Trre7g04680 158 Gene3D - 31 87 - -
Trre7g04680 158 SMART brlzneu 29 93 IPR004827 GO:0003700|GO:0006355
Trre7g04680 158 Pfam bZIP transcription factor 33 91 IPR004827 GO:0003700|GO:0006355
Trre7g04680 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 36 51 IPR004827 GO:0003700|GO:0006355
Trre7g04680 158 PANTHER BZIP TRANSCRIPTION FACTOR 44 10 154 - -
Trre7g04680 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 31 77 IPR004827 GO:0003700|GO:0006355
Trre7g04680 158 CDD bZIP_plant_GBF1 34 84 IPR045314 GO:0003700|GO:0006355
Trre7g04680 158 MobiDBLite consensus disorder prediction 1 26 - -
Trre7g04680 158 Coils Coil 42 76 - -
Trre7g04680 158 MobiDBLite consensus disorder prediction 1 70 - -
Trre7g04680 158 SUPERFAMILY Leucine zipper domain 33 85 IPR046347 GO:0003700|GO:0006355
Trre7g04680 158 FunFam BZIP transcription factor 31 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04680 Trre-Chr7 54561820 54562296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04680 29 158 bZIP Transcription Factor Family AT4G34590 54.015 1.76e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre7g04680 bZIP_2 1.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04680 K25786 - gmx:778139 163.696