Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04675 ATGGATATGGAACATTACAAACAAAAGAGCAACGAAGACAAACACATAGAGAAACTGGTAATGAAGAATAAGTCCAAGTTTGTTGGAGTGAGACAAAGGGCATCAGGGAAATGGGCAGCAGAGATTAAAGACACATCAAAGAACATTAGGATGTGGCTTGGTACATATAAAACTGCCGAGGAAGCTGCTCGAGCTTATGATGAAGCGGCTTGTCTTCTTCGAGGTTCGAACACTCGCACCAATTTTTCTACAACTCATTTCATTCCGTCCAATTCTCCTATATCTCTCAAACTCAAAAACCTCCTCCATCGAAAATCAATCTCAAATCAAAGTCAAAACAAGTCCACTATGATGAGTTCCTGTTTTCAAAGTGCTCCTATTGATAATAGCATCATGGTAATGGAAAATGAAAACAACTCTTCTTGTAGTAGTGAAGAGTCAAAGTCTTTGTTTTGGGTTCAAAATAAAGCATCTGAATATAACCCTTATTATGGGGTTGATATGAATATGATGAACTATTCATTGGGCATTACACCAAATACATTGCAGTTTGATTATTCTTGGCCATTATCTCAACAAAGGATTAACGAGTGCACAACAACAAAAGATAATATGAATGTATATGGCATGAATGAGTGCTATGTGGAGGATACATATGAATCAAAGTATGAATATGATGTCAATTATCCTCTTTCCCACTTGTTCTGCTTCACTTGA 717 0.3682 MDMEHYKQKSNEDKHIEKLVMKNKSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAACLLRGSNTRTNFSTTHFIPSNSPISLKLKNLLHRKSISNQSQNKSTMMSSCFQSAPIDNSIMVMENENNSSCSSEESKSLFWVQNKASEYNPYYGVDMNMMNYSLGITPNTLQFDYSWPLSQQRINECTTTKDNMNVYGMNECYVEDTYESKYEYDVNYPLSHLFCFT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04675 238 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Trre7g04675 238 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Trre7g04675 238 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Trre7g04675 238 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Trre7g04675 238 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Trre7g04675 238 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Trre7g04675 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 135 - -
Trre7g04675 238 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Trre7g04675 238 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Trre7g04675 238 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04675 Trre-Chr7 54506539 54507255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04675 3 103 AP2-EREBP Transcription Factor Family AT5G19790 68.317 5.23e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g04675 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04675 K09286 - gmx:100803832 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04675 7 54506539 54507255 Trre7g04675 7 54506539 54507255 ECH