Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04646 ATGGATTTTCAAGTCGTCGTTCTCGCCGGCGGCGTCTCCAAAAAACTCCTCCCACTCGTTTCAAAGGAACTTCCGAATGCTTTACTTCCCGTCGCAAATCGTCCGGTTCTCTCTTACGTTGTTGAGCTTTTGGAGCTTAGCAACCTTAAAGATCTCATTGTGGTAGTTGAAGGTAAAGATGTTGCTCTTAATGTTGGTGCTTGGATTTCAGGAGCTTATGCTGATCGTCTCCATGTTGAGGTTGCTTCAGTTCCGGAGGATGTGGGAACAGCTGGTGCAATTCGAGCAATTGCACACCACCTAACCGCGAAAGACATTTTGATTGTCAGCGGTGATCTTGTTTCCGATGTGCCGATTGGTTCTGTTGCGGCTACTCATCGACGGCATGATGCGGTTGTTACTGCTTTGCTCTGTAATGCTCCTATAAGTGGACCTTTGGAGTCGGTGTCTTCTGGTGGGAAAGACAAAACCAAGAAACCTGGCCGCTATGATTTGATAGGGTTGGACCATACGAAACAGTTTTTACTTCACATAGCTACTGGAGCTGAAGTTGAGAAAGATCTTCGAATTCAGAAGAGCATACTTCGTGCCGTTGGCCAGATAGAAATAAGAGCTGATCTAATGGATGCCCACTTGTATGCATTCAAAAGATCAGTACTACTAGAAGTTCTAGATCAGAAGTCCGCGTTTCAAAGCTTAAAGCATGATGTATTGCCATATCTTGTCCGCAGCCAACTGAATTCAGAAGTATTATTAAATGGTACACCACAAGCAGAAGAAAATGGAACTGAGAAAGTTAATTCTCAAAGCAATCAACAAATGATATCTCAAATACTTGCTAATGCATCTGAGCCAACCTTTCATCTACGACATACACTTAGTACTGTTGGTTCTGATTCTGTTCGAAGAGCCCATAAATGTTGCGTCTATATTGCTGGGAGCAGCAAGTACTGTGCTCGCCTGAATTCTATACAAGCATACAATGATATAAACCGAGATGTGATAGGAGAAGCTAATCATTTGTCAGGGTATTCCTTCTCTGCTCATAACAACATTATCCATCCTACTGCAGAGTTTGGGGCAAAAACAACTGTAGGACCGCATTGTATGCTGGGGGAAGGTTCACAGATGGGTGACAAGTGCAGTGTAAAACGGTCTGTCATTGGTCGCCACTGTAGGATAGGTGCCAATGTTAAGGTTGTTAATTCCGTAGTTATGAACCATGTTACTATTGGTGACTTTTGTTCAATCCAAGGTTCTGTCATTTGCAGCAATGTACAGCTCCAAGAACGTGCCATACTAAAAGATTGTCAAGTTGGAGCAGGTTTCGTGGTCACTTCCGGTAGTGAGCACAAAGGAGAGGTATTGGCTAAGAAATGA 1380 0.4355 MDFQVVVLAGGVSKKLLPLVSKELPNALLPVANRPVLSYVVELLELSNLKDLIVVVEGKDVALNVGAWISGAYADRLHVEVASVPEDVGTAGAIRAIAHHLTAKDILIVSGDLVSDVPIGSVAATHRRHDAVVTALLCNAPISGPLESVSSGGKDKTKKPGRYDLIGLDHTKQFLLHIATGAEVEKDLRIQKSILRAVGQIEIRADLMDAHLYAFKRSVLLEVLDQKSAFQSLKHDVLPYLVRSQLNSEVLLNGTPQAEENGTEKVNSQSNQQMISQILANASEPTFHLRHTLSTVGSDSVRRAHKCCVYIAGSSKYCARLNSIQAYNDINRDVIGEANHLSGYSFSAHNNIIHPTAEFGAKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGDFCSIQGSVICSNVQLQERAILKDCQVGAGFVVTSGSEHKGEVLAKK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04646 459 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 349 IPR029044 -
Trre7g04646 459 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 459 - -
Trre7g04646 459 CDD LbH_eIF2B_gamma_C 370 450 - -
Trre7g04646 459 Gene3D Hexapeptide repeat proteins 350 456 - -
Trre7g04646 459 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 425 IPR029044 -
Trre7g04646 459 Pfam Nucleotidyl transferase 6 137 IPR005835 GO:0009058
Trre7g04646 459 CDD eIF-2B_gamma_N 3 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04646 Trre-Chr7 54261824 54265120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04646 290 450 Eukaryotic Initiation Factors Gene Family AT4G18300 27.174 2.08e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04646 K03241 - gmx:100783346 787.719