Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04597 ATGCGTTGTTACGGCTTAACAATCCCCGGAAGCGATAATCGCTTCTTCATTCCAACTCCAACACTAACACCATCACTATCCTTCAAACCCAAACCCATAACCCGAATTTCATTCGGGTCTAAACTCAAAGCCACTTTCAACGACGGCGTTGTTGCAGACCAACTCAGTTTCTATGATCTTCTCGGTATACCCGAATCCGGTTCATTAATCGATATCAAAAGTGCTTATAAACAACTTGCAAGAAAGTATCATCCTGATGTTTCTCCACCGGGTCGGGTCGAAGAATATACAAAGAGGTTTATTCAGGTACAAGAAGCGTATGAAACTTTGTCTGATCCTTCAAGGAGAATTATGTATGATAGAGATATGGCTAGAGGGATTCATCTTGCTTTCAATGCTCGTAAACGCTATAATCATTCTGATCAGGTGAGTGAACAAAAAGGCGAATGGAAATCTCGTTGGCAATCTCAACTCTCTGGTTTGAAGAGAAGAAGTGAGAGCAAGGATGGTGCTGAGAACATGTCATGGGCTGCTCGAATGCGCCAGCAGAGGGAGGAATTGTGA 564 0.4309 MRCYGLTIPGSDNRFFIPTPTLTPSLSFKPKPITRISFGSKLKATFNDGVVADQLSFYDLLGIPESGSLIDIKSAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRIMYDRDMARGIHLAFNARKRYNHSDQVSEQKGEWKSRWQSQLSGLKRRSESKDGAENMSWAARMRQQREEL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04597 187 SUPERFAMILY Chaperone J-domain 53 127 IPR036869 -
Trre7g04597 187 CDD DnaJ 57 112 IPR001623 -
Trre7g04597 187 PRINTS DnaJ domain signature 76 91 IPR001623 -
Trre7g04597 187 PRINTS DnaJ domain signature 95 115 IPR001623 -
Trre7g04597 187 PRINTS DnaJ domain signature 58 76 IPR001623 -
Trre7g04597 187 ProSitePatterns Nt-dnaJ domain signature. 100 119 IPR018253 -
Trre7g04597 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 52 186 - -
Trre7g04597 187 Gene3D DnaJ domain 43 159 IPR036869 -
Trre7g04597 187 SMART dnaj_3 55 115 IPR001623 -
Trre7g04597 187 ProSiteProfiles dnaJ domain profile. 56 123 IPR001623 -
Trre7g04597 187 FunFam Chaperone protein dnaJ 20, chloroplastic 43 152 - -
Trre7g04597 187 MobiDBLite consensus disorder prediction 158 187 - -
Trre7g04597 187 Pfam DnaJ domain 57 120 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04597 Trre-Chr7 53861758 53865243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04597 52 120 C2H2 Transcription Factor Family AT1G74250 38.889 9.72e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04597 - - gmx:100101903 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04597 7 53861758 53865243 Trre7g04597 7 53861758 53865243 ECH