Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04586 ATGGGTCGTCGTCGTATTGAGATTGAGTCGGTGAAAGACCCCAACACAAGGCGGGTCACATTCTCTAAGCGTCGATCTGGCTTATTCAAAAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTCGCTATTGTCCTGTTTTCTCCAGGAAATAAGCCTCATTCTTTTGGTCACCCAGAAGTGGATGCTGTTGCGGCCAAATATCTTCAACCAGATGCTGAACCAAGTGACCTTGAAGGAGACCCCTCTTCTGATGCTTCCAACATGGACGAGTTGAATCAAGAACTTGCTGAGGTGTTGGCCCAAATTCGGGAAGGTGAAAAGCAGGCTAAGACTTATGATGAGATCCTGAAGCAAAATGATGTGACAACACTCTTCGACCTTGAAGAATTGAGAGATTCATATAAAGAATTTCAAGACGGGGTAAAATTGCATCTTAGTGATCTCGAAATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCAGTGGTGGGGGTAAAAGCGTAA 510 0.4373 MGRRRIEIESVKDPNTRRVTFSKRRSGLFKKANELSILCGAEVAIVLFSPGNKPHSFGHPEVDAVAAKYLQPDAEPSDLEGDPSSDASNMDELNQELAEVLAQIREGEKQAKTYDEILKQNDVTTLFDLEELRDSYKEFQDGVKLHLSDLEISECMMLLAKEPVVGVKA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04586 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre7g04586 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trre7g04586 169 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre7g04586 169 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trre7g04586 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g04586 169 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Trre7g04586 169 Coils Coil 90 110 - -
Trre7g04586 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre7g04586 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre7g04586 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre7g04586 169 MobiDBLite consensus disorder prediction 70 89 - -
Trre7g04586 169 PANTHER MADS BOX PROTEIN 3 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04586 Trre-Chr7 53758177 53758686 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04586 1 162 Type I MADS-box Gene Family AT2G34440 40.571 2.00e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g04586 SRF-TF 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04586 - - mtr:11439559 230.72