Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04585 ATGGAAACTGCTCCGCTCTCATCGGCCACCGCTGCCGGAAACGGAGGAGGTCCGGCGCCGTTTCTTCAGAAAACGTATGACATGGTGAACGATCCCAGCACAGATGCGATCGTTTCGTGGAGCTCTACCAATAACAGTTTCGTCGTTTGGAATCCCCCTGAATTCGCTTGCGTTCTTCTTCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACCTATGGGTTTCGAAAAACGCATGCTGAGCGTTGGGAGTTTGCTAATGATGATTTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGGAGGAAACCTATACACAGTCATAGTCATCCTCCGGGTTCTGTTGTAGATCCTGAAAGGGCGTCGTATGATGAACAAATAGAGAAACTCTCACGCGAGAAAAGTTCTCTTGAATCCAATCTCTTAAACTACAAACATCATCAGTCAAAAACAAAACTTCACCTGGAAGAATTTCAGAAGCGTTTGGATGGTATTGAGAACAGGCAAAAAAATTTGCTGAACTACTTTGAGAAGGCTCTTCAAAATCCTTCTTTTGTTAATCAACTTTTGTGCAAAATCGAATTCATGGATTTGGCGGCATTAAATAAAAAAAGGAGATTGCCTGAGGTTGATCCCGTGGAGCCTGTTGCTGAAGTTAGCTTGGTTGACAATCATAGCAATTTTAGACTGGAATTTGGAAATGTTTTCCAACAAGATTTCTCAAACAAACTCAGACTGGAATTGTCACCAGCCGTCTCAGATATGAACTTGGTATCAGGTAGCACACAGGGTTCCAATGAAGATGAGGAAAGCCCACAGAAGAACATGTCTGATGGAGAACTGAAAGGAATGCAGACAAGAACTGCCCTTGCTTTTGCACCTGAAACAGTAGATCTTGCAGATACTGGGGCGTCTTTTACTTTTAACATGGATCCGTGTTTATCACGAAGAGCAACAACTACTGAGAATCCAAATCTTCACTCTCTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTGAATTTAACTCTGGCATCTTGTCCGTTGGAGTTCAACAGGAATTCATACTCAGCCCGATCACCCCAAATAGACTGTCAAGAAATTGGCAATTTGGCAGAATCAAGAGTTACCGCCAATGGTAAAGAATCTGAAAGTGGAGTTTCCTTAAACCGAATTGTGGCTAGCGGAGTTATCACTTTAGCTTCACCGCAGGAGGCTTCAGGTAACGGCCAAGTCAAAACAGCTGCTCCACATGCAGTGAATGACGTGTTTTGGGAACAGTTCCTCACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGGGCAAATCCATATGACGAGCAAGAGGAAGGACGGGCAGTTCATGGAATCTCCAGTAACATCAAGAATATGGATAATCTCACACTTTGA 1461 0.4312 METAPLSSATAAGNGGGPAPFLQKTYDMVNDPSTDAIVSWSSTNNSFVVWNPPEFACVLLPTYFKHNNFSSFIRQLNTYGFRKTHAERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERASYDEQIEKLSREKSSLESNLLNYKHHQSKTKLHLEEFQKRLDGIENRQKNLLNYFEKALQNPSFVNQLLCKIEFMDLAALNKKRRLPEVDPVEPVAEVSLVDNHSNFRLEFGNVFQQDFSNKLRLELSPAVSDMNLVSGSTQGSNEDEESPQKNMSDGELKGMQTRTALAFAPETVDLADTGASFTFNMDPCLSRRATTTENPNLHSLEPSSEEGDSHISCQLNLTLASCPLEFNRNSYSARSPQIDCQEIGNLAESRVTANGKESESGVSLNRIVASGVITLASPQEASGNGQVKTAAPHAVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRAVHGISSNIKNMDNLTL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04585 486 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Trre7g04585 486 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04585 486 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04585 486 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04585 486 MobiDBLite consensus disorder prediction 109 129 - -
Trre7g04585 486 FunFam Heat shock transcription factor 1 14 111 - -
Trre7g04585 486 Coils Coil 128 155 - -
Trre7g04585 486 MobiDBLite consensus disorder prediction 264 278 - -
Trre7g04585 486 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04585 486 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04585 486 MobiDBLite consensus disorder prediction 264 287 - -
Trre7g04585 486 Coils Coil 163 183 - -
Trre7g04585 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 284 IPR027725 -
Trre7g04585 486 Gene3D - 16 111 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04585 Trre-Chr7 53753429 53756442 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04585 21 486 HSF AT4G13980 53.814 3.54e-156 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre7g04585 HSF_DNA-bind 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04585 K09419 - gmx:100786408 718.768