Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04583 ATGGAAGCAGCTCCGCTCTCTTCATCTGTCGCCACTACCGGAAACAAAGAAGACATGGCTCCGTTTCTTGAGAAGACATATGACATTGTGAACGATCCAAACACAGACGCGATCGTTTCATGGAGCTCTACCAACAACAGCTTCGTCGTTTGGAACCTTGCTGAATTCACTTACTTTATCCTCCCAACCTATTTCAAGCACAAAAATTTCTTAAGCTTCATCCGTCAACTCAGTACATATGGATTTCGAAAAATAGATGCTGGGCAATGGGAGTATGCTAATGAAAATTTTATAAAAGATCAAAAGCATCTTCTGAAGAATATACAACGTAAGGACAGTCATAATCATTCTCTAGATCCTGAAGAACTAATAGAGAAACTCAACAATCATCAAAAAAGAACAAATCTTCAGCTGGAAAAGTTTCAGAAACGATTGGATGCTATAGAGACCATGCAAAACAATTTGATGAACTTATTTGAGAAAGCTCTTCAGAATCCTTCTTTTGTTGGTCAACATTCTGACAAATATGCCTCAGGTTGA 540 0.3833 MEAAPLSSSVATTGNKEDMAPFLEKTYDIVNDPNTDAIVSWSSTNNSFVVWNLAEFTYFILPTYFKHKNFLSFIRQLSTYGFRKIDAGQWEYANENFIKDQKHLLKNIQRKDSHNHSLDPEELIEKLNNHQKRTNLQLEKFQKRLDAIETMQNNLMNLFEKALQNPSFVGQHSDKYASG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04583 179 Coils Coil 124 158 - -
Trre7g04583 179 Gene3D - 14 112 IPR036388 -
Trre7g04583 179 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 172 IPR027725 -
Trre7g04583 179 SUPERFAMILY "Winged helix" DNA-binding domain 19 111 IPR036390 -
Trre7g04583 179 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04583 179 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04583 179 FunFam Heat stress transcription factor B-4 14 112 - -
Trre7g04583 179 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04583 179 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g04583 179 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04583 Trre-Chr7 53739843 53741128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04583 7 169 HSF AT4G13980 47.619 1.06e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre7g04583 HSF_DNA-bind 2.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04583 K09419 - tpra:123914579 227.254