Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04563 ATGCAATCCCTCAAGTTACGCACACTACTTTTTTATCCTCCTTTCACTTCTAACTCACTTCAATCCTTTATCTTTTCATTTTCCACTGTTTCTTTATCATCCTCAAAAACCCAATACTCAAAAGAAACCACTTCTCTATTTAACTTCCTTAATTCCAATGCCAAATTACCTAAATCACACTCCATTTTTATCTCTAAACGTGCTTCAAGAGCTACATTCCCTCAAAGGCCCTTGTCTGTCATCAACTTTTTCAAACAAAATGGATTTTCCGAAACTCAGATTCACTCTATCGTTCGTCAGAGAGTTCAATTACTGTTTTCAGATGTTGATAAAACTCTTAAACCAAAATTTGAGCTCTTTCGGCAATTGGGTTTTCAGGGTTCGGATTTAAGCGACTTTATTTCCAAGCATCCAACTGTTTTGACTGCTAGTTTGAACAAAACGTTGGTTCCGTCAGTGAAAGCTATTAAGAAAATTGTATGGAATGATAAAGAGCTTGTTCAAGTTTTGTCTAAATGTGGTTGGATACTCCCAAAGTACCAATTATTTGTTGCCAATGTTGCTTTCTTAGAGAGTTTTGGCATTGCCGGGGATCAGGTTGTGATTCTACTCAAGCGACAGTCAAGACTTTTGGTTTCATCGCTGTCTACTATTAGAAAGTATTTTTTGCAAGCAGAAGAATTGGGTTTCAATCAAAATTCAAGAATGTTTATTCATGGACTTCATACGATATGCGCTTTGAGCCATAAAACATTTAAGAAAAAGCTGGATTTATTTCAGTGTTTTGGGTTTTCTAAAGATGAGAGCTTGCTTATGTTCAAAAAGGCTCCAGCTTTGTTTAGGACATCTGAGAAGAAATTAAAGATTGGAATTGAATTCTTCTTACATACAGTTATGCTGCCAAAGTCAATATTGGTTAGTCGGCCTACGATTTTGATGTATAGCATTGAGGATCGAGTGTTTCCTCGATATAGAGTTTTTCAGCTTTTGAAATCACAAAATCTATGTATGAAGGGTCCAAGCTTTGTTTCTATGTTATGTTATTCTGAGGACATGTTCTTGGACAAGTTTATATCAAAGTTTAAAGGAAATGCAGAGGCATTATTGATAGCTTACAAGGGGCATCTTCTGGAAGTCTGGAACGAAAGGAAGGGTTAG 1158 0.361 MQSLKLRTLLFYPPFTSNSLQSFIFSFSTVSLSSSKTQYSKETTSLFNFLNSNAKLPKSHSIFISKRASRATFPQRPLSVINFFKQNGFSETQIHSIVRQRVQLLFSDVDKTLKPKFELFRQLGFQGSDLSDFISKHPTVLTASLNKTLVPSVKAIKKIVWNDKELVQVLSKCGWILPKYQLFVANVAFLESFGIAGDQVVILLKRQSRLLVSSLSTIRKYFLQAEELGFNQNSRMFIHGLHTICALSHKTFKKKLDLFQCFGFSKDESLLMFKKAPALFRTSEKKLKIGIEFFLHTVMLPKSILVSRPTILMYSIEDRVFPRYRVFQLLKSQNLCMKGPSFVSMLCYSEDMFLDKFISKFKGNAEALLIAYKGHLLEVWNERKG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04563 385 PANTHER CGI-12 PROTEIN-RELATED 48 360 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 FunFam Mitochondrial transcription termination factor-like 145 365 - -
Trre7g04563 385 Pfam mTERF 182 353 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 Pfam mTERF 81 172 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Trre7g04563 385 Gene3D Transcription termination factor 3, mitochondrial 162 362 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04563 Trre-Chr7 53585735 53587316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre7g04563 mTERF 4.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04563 K15032 - aew:130752103 324.709