Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04553 ATGGGAGCACTTAGCACATACTATAATTGTTACCCTTATCAACCTCATCAAACTAACAACAACTCAGAAATCATCACTTTTCAACATCATGAACAAGAACAACAACAACAACAATCATTACCTCAATTATCACAAATTTCAGAACATGATAATAACTACCATTTTTCTTCTTACTTAGATGAAACCTTGTTTTTTCAAAGTCCTTATTTTTATTCAAATGAGACTTACCCTTCTTATGAACAACTACTTCTTGACACCACTTTCTCTTCTCAAAATGATGGTTTCATTTCAATGAATGAAATTTTCTCAAATGAAGAAAATTTCAATTTCAACACCTACCTTCCATGCACAAAACGACAAAAGCTATGTTATGAGGAGAAAAATGTACAACAACAAGAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATTACTAACCCTTTTGTTTCTTTTGAAGCAGAACAACCGTTTTGTTCTGCTTCAAAAATTGTTGATGTTGTTGGTTGCGAGAAGAAAGTGAACGAAAAGACTATCTCGTCGCAGAGTATTGCGGCGAGAGAAAGAAGGAGAAAGATAACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGTTGTAAGATGAACACAGCAGAGATGTTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTACTTGTTTCTCCTTTTGTTCAAGAGAAATTGTATTTGGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTAACCAATAATGATGATGTTAGATCAAAACCTACCATCCTTAAGGGTCTTAAGCAGCTTATTGGAAAAGAGATTAATGAGAAGAAACCAAAGCAAGAATAA 948 0.3449 MGALSTYYNCYPYQPHQTNNNSEIITFQHHEQEQQQQQSLPQLSQISEHDNNYHFSSYLDETLFFQSPYFYSNETYPSYEQLLLDTTFSSQNDGFISMNEIFSNEENFNFNTYLPCTKRQKLCYEEKNVQQQEELLNSTNFFVDEFITNPFVSFEAEQPFCSASKIVDVVGCEKKVNEKTISSQSIAARERRRKITEKTQELGKLVPGGCKMNTAEMFNAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPSEDLHKLLVSPFVQEKLYLEEKCFVPKEFVTTLTNNDDVRSKPTILKGLKQLIGKEINEKKPKQE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04553 315 Gene3D - 177 247 IPR036638 GO:0046983
Trre7g04553 315 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 277 IPR045843 GO:0003700|GO:0006355
Trre7g04553 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 237 IPR036638 GO:0046983
Trre7g04553 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Trre7g04553 315 SMART finulus 185 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04553 Trre-Chr7 53534467 53536622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04553 27 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 38.435 2.23e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g04553 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04553 - - tpra:123914583 530.406