Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04549 ATGGAAATTGTTCGACCTCAGAGTCACCGGAACTTGTTTTCCTCTAACGACGTCGTTTCTGTTCCAACTATTCCCCTCTATCGCTCTGCTCCGCCGCTCGAAGTCAGACTCGAAGATTTCGAGTCTTTCGCCATCGATCGCCTCCGAGTTCTGAAGGGGATTTCTGATGGTTTGTCACGGGGGAAGAAACCGGATGAAATGGAAAAATTGGTAAAAGAATCGTGGAAAGTGCACATGAGACATCAGCATGCTTCTGAAGTTGTAAACAAGGATATTATATCTCATTTCGTTTTACGTTTGGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTCTCTATGGAATGTGCGCTTTTTCGCTACCGTTTTCGTGTTCTAACTACTGAAGCTCAGAGGGCAATCATGGACGAATTTGACCTTACTTGCAAGGCTGTTAACAATGTGGAATTTGAGAGCATAAAAGAGAAATTAGGACAAGTTGCACGTTCCATGGGTCAGCCTTCACGCACAGTCGATACTATATTTTACAAGGTACCATTTGAAGAAGTTCCAGAACTTGTAGCTGGACGTAAAGTGTTTATAAGTCAAGGATATGCTTATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCTACTCTATTCCGCAGTCATCTGTCAAAAACACTTATCCTTACAAACAGAAAATGGACAGCTTCAATCAGAGATCAAGAGAAACATAGGCTGACTCCTATTGTGGAAGCCTTGAGCTCAAGTTATCTGGGTCCTGATTTTTCTCAGCCAAGAGAATATGCTGAGATATCTTTGAAGGACATTGATCAAGTTGCCAAGACCTCGTTTCCTTTGTGCATGCGTCACCTGTTTGATAAGCTGAAAGAGGACCATCATTTAAAGCATGGTGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGTTTAAACCTGGATGATGCACTTGCGTTTTGGAGAGCCGAGTTCTCTAAGAAGATTGGTTTGGAGAAGTTTGAGAAAGAATATTCATATAACATACGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTCAAAAGGTTATTTCATCAACTCCCGGTGCTGGTGATCAGCATGGTTGCCCCTATCGACAGTTCAGTGAGGAGAATCTAAGAGCTGCTCTTGGCAGAATGGGGGTGAATAGTCGAGCAATGGAAGATGTCATGGACAAAGTGCGAAATAGACATTATCAGTTAGCATGTACCTTGACATTTGAAGCTCTTCACGGCGTGACATGTGATGCAGGGATTAACCATCCAAATCAATATTTCAGTGACAGTCAAAAGATATTGCAACCAAAGGTAGACTAA 1362 0.4244 MEIVRPQSHRNLFSSNDVVSVPTIPLYRSAPPLEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVKESWKVHMRHQHASEVVNKDIISHFVLRLVYCRTEDLRKWFLSMECALFRYRFRVLTTEAQRAIMDEFDLTCKAVNNVEFESIKEKLGQVARSMGQPSRTVDTIFYKVPFEEVPELVAGRKVFISQGYAYVAMNQVVSLVATLFRSHLSKTLILTNRKWTASIRDQEKHRLTPIVEALSSSYLGPDFSQPREYAEISLKDIDQVAKTSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKIGLEKFEKEYSYNIRHNYGKEGKRTDYTPYSCQKVISSTPGAGDQHGCPYRQFSEENLRAALGRMGVNSRAMEDVMDKVRNRHYQLACTLTFEALHGVTCDAGINHPNQYFSDSQKILQPKVD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04549 453 CDD PriL_PriS_Eukaryotic 26 444 IPR016558 -
Trre7g04549 453 Gene3D - 6 249 - -
Trre7g04549 453 FunFam DNA primase large subunit 5 249 - -
Trre7g04549 453 Pfam Eukaryotic and archaeal DNA primase, large subunit 176 441 IPR007238 GO:0006269
Trre7g04549 453 PIRSF DNA_primase_large 3 453 IPR016558 -
Trre7g04549 453 PANTHER DNA PRIMASE LARGE SUBUNIT 20 450 IPR007238 GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04549 Trre-Chr7 53497022 53503090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04549 1 452 Core DNA Replication Machinery Family AT1G67320 66.598 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04549 K02685 - gmx:100816023 815.068