Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04539 ATGACAATATCTATTGGTTTTGAATACAATATTAATGATCTGTATCAAGAAGCTCAAATGAGATGGTTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAACAGTATCAGTTCACTCAAGAGCCCCCGCAACTGCCCACAAGTGGTTCCCTGTTTCTGTTTAACAGACGAGTACTGCGTTTCTTCCGTAGAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCTCACGAACGACTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGCATTTGACCATATTGTTCTTGTGCATTACAGAGACACGAGTGAGGGAAGGCTCAGTTCTGGACCTGGTACACAATTGTCACCGGGTTCATCTTCTGCATACAGTCAGAGTCCTAGCTCATATAGTAATCATAACCCGGGGTCAACGTCCATTATTGATGATTCATATGAACCTAATCAGAGTTTCTCTAGTCCTGTATCTGCTGAAGTTACCTCCGATAACAATGGAATGAGTCACTCGGAAGGAACAGAAGCAGAATCTGGAACCTCAGCTGACTTTAAGATTACTCAAGCTTTGCGCCGATTGGAGGTTCAGTTAAGTTTGAATGAAGATAACTTCGAAGAAATTGCTCCCTTCCGCAATGAGCATGAAGCTACCCATGATTCAATAGCACAGAACCATGAAGCAGTGATCTTCAAGCAAGAGGAGTCTGCTGCTCTTTCTGGACCAGATGATCAAGGGCTATTATATGATGGATATAATGGAGGGCAAGGTGATAATGGTGAAAGTTATCGTGAATTACTAGACCATGATTTCCCTGATGGAAATGAAAAGGCTTTATCTTGGAAAAATGTATACAGTCCAGCTGGAAATCGGGAGAATTCACCATCTTCTTCAATGAGGGAGCCAGTTACCAACCTGGAAGACGATTTCTGGACAAATTTCAACACAAATAATGCTGGAAACTCTGTTTTCTCACTACCTCAAGCTGTTGGTGGAGTCACACTTCCTCCATATTCTTCTGTGGTAGAAACACAAGAAACTCGTTCTGGCTACTATGCGACATTGTTTAACCCAAGCCAAGTCGGAGCATCTCATGATGCAGGTTCAAGCTTAACTGTTTCACAAAAACAAAAATTTACCATAAAGGCAGTCTCCCCGGGATGGGGTTATGCCTCTGAGACTACAAAGGTTTACATTATTGGGTCTTTTCTCTGTCATCCTTCCAGTTCTGATTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCATATTCCTGGAAAGGTTACTCTGTGCATTACATCTGGAAACCGGGAGTCATGCAGTGAAGTAAGAGAATTTGAGTATCGTGATAAGACTGAGAGTTGCACCCACAATACTCCATCGGAAACCGAAGCCAGCAGAACTCCAGAAGAGCTGTTATTACTTGTTAGATTTGGGCAAATGCTCCTTTCTGCGTCATCTGCAAGTAATGATAACAACGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATAATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGCACTGGAACTTCTTCTGGTACTATCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGGTTTGGCTTACGTGTAGATCCCAGGAAATAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATTAATTTCCGTGACATCAATGGGTGGACTGCCCTTCACTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCGTCGCTTATCGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCATCAATTGCATCTAGCAGTGGGCATAAGGGACTCGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGTCATCTGTCATCGCTTACACTGAAAGAGAGTGAGCTTTCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTTGTAATGTCTCCAAGGAAAATATTGCTTTCAGTGAGGATCGGGCCTCGCTTAAAGATACCTTAGCTGCTGTCAGGAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGCAAAAGAAACAAATGTGGTTATGAGTGGACATGATATCAGTGCAAGTAGCATTGGTGACATGCCAGAGTTTTATGCTATGTCAAAACTTGCCTTTCGGAACTCACGTGATAATAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTATCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCAGAGGTGGAGGTTAATGAAAATGAAGATGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTAGATGGTGAAATTGACAAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGCGAGCAATATCATCGCATGCTCGAGAAGTATCGCCAAGCCAAGGCTGAACTTGCACAAACGAGTGAAGAAAAATCGTTAACAACTTCTATAGAAGATTATTTGAACATGGATGATGATTCTTATTAA 2904 0.426 MTISIGFEYNINDLYQEAQMRWLKPAEVMYILQNHEQYQFTQEPPQLPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDTSEGRLSSGPGTQLSPGSSSAYSQSPSSYSNHNPGSTSIIDDSYEPNQSFSSPVSAEVTSDNNGMSHSEGTEAESGTSADFKITQALRRLEVQLSLNEDNFEEIAPFRNEHEATHDSIAQNHEAVIFKQEESAALSGPDDQGLLYDGYNGGQGDNGESYRELLDHDFPDGNEKALSWKNVYSPAGNRENSPSSSMREPVTNLEDDFWTNFNTNNAGNSVFSLPQAVGGVTLPPYSSVVETQETRSGYYATLFNPSQVGASHDAGSSLTVSQKQKFTIKAVSPGWGYASETTKVYIIGSFLCHPSSSDWACMLGDVEVPVEIIQDGVMCCEVPSHIPGKVTLCITSGNRESCSEVREFEYRDKTESCTHNTPSETEASRTPEELLLLVRFGQMLLSASSASNDNNESGIFIKQKADDNSWSHIIEALLFGTGTSSGTINWLLEELLKDKLQVWLTCRSQEIDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIASSSGHKGLAGYLSEVALTSHLSSLTLKESELSKSSAELQADLTVCNVSKENIAFSEDRASLKDTLAAVRNTTQAAARIQAAFRSHSFRKRRAKETNVVMSGHDISASSIGDMPEFYAMSKLAFRNSRDNNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEVEVNENEDDEDEDILKVFRKQKVDGEIDKAVSRVLSMVKSPDAREQYHRMLEKYRQAKAELAQTSEEKSLTTSIEDYLNMDDDSY 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04539 967 MobiDBLite consensus disorder prediction 943 967 - -
Trre7g04539 967 Gene3D - 810 858 - -
Trre7g04539 967 Pfam Ankyrin repeats (3 copies) 616 694 IPR002110 GO:0005515
Trre7g04539 967 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Trre7g04539 967 ProSiteProfiles IQ motif profile. 752 781 IPR000048 GO:0005515
Trre7g04539 967 MobiDBLite consensus disorder prediction 945 961 - -
Trre7g04539 967 MobiDBLite consensus disorder prediction 132 209 - -
Trre7g04539 967 ProSiteProfiles IQ motif profile. 810 839 IPR000048 GO:0005515
Trre7g04539 967 SMART ANK_2a 634 663 IPR002110 GO:0005515
Trre7g04539 967 FunFam Calmodulin-binding transcription activator 2 809 857 - -
Trre7g04539 967 Pfam IQ calmodulin-binding motif 835 854 IPR000048 GO:0005515
Trre7g04539 967 Pfam IQ calmodulin-binding motif 812 830 IPR000048 GO:0005515
Trre7g04539 967 SMART iq_5 751 773 IPR000048 GO:0005515
Trre7g04539 967 SMART iq_5 832 854 IPR000048 GO:0005515
Trre7g04539 967 SMART iq_5 809 831 IPR000048 GO:0005515
Trre7g04539 967 Gene3D Immunoglobulins 399 495 IPR013783 -
Trre7g04539 967 SMART CG_1_2 14 132 IPR005559 GO:0003677
Trre7g04539 967 SUPERFAMILY E set domains 406 490 IPR014756 -
Trre7g04539 967 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 754 857 IPR027417 -
Trre7g04539 967 ProSiteProfiles Ankyrin repeat region circular profile. 634 660 - -
Trre7g04539 967 MobiDBLite consensus disorder prediction 135 209 - -
Trre7g04539 967 Gene3D - 513 699 IPR036770 -
Trre7g04539 967 Pfam IPT/TIG domain 406 489 IPR002909 -
Trre7g04539 967 FunFam Calmodulin-binding transcription activator 4 isoform A 517 699 - -
Trre7g04539 967 ProSiteProfiles IQ motif profile. 833 858 IPR000048 GO:0005515
Trre7g04539 967 SUPERFAMILY Ankyrin repeat 602 695 IPR036770 -
Trre7g04539 967 Coils Coil 926 949 - -
Trre7g04539 967 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 10 942 - -
Trre7g04539 967 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Trre7g04539 967 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04539 Trre-Chr7 53414703 53422416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04539 7 946 CAMTA Transcription Factor Family AT1G67310 52.178 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre7g04539 CG-1 1.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04539 K21596 - gmx:100786880 1407.12