Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04534 ATGGACTGGAATGCAAAACCACCAAGCTGGATGATCGAATTAGATCGAGAAAACAATGTTGGGCTGTTCGATATGCTTGGTGGAAGTGGTTATTCTGGCTCTGACCTAATTCTCGGTTCTACATCAAGGAGTTCAAAATCAGCTTCAATTGGTGCATCATCAAATAGGGACAGTAGAACAAAAGAATATCCGATTGAAAGTTCTCATGCACCGGAACTTTCTTCAGTCTCTGGTGAACCATTGCTCACTTTAAGACTCGGTAAAAGAATGTACTTTGAGGATGTATCTCCCGAAAGTGATTCCGAATACTTATCTTATTCAAGGGATCTCATGTCATCATCTTTAAGTGTTGGAAAGAAATGCAAGTCCAATGGTCAGAACTTACAATCTCCGCGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCGGCTAAAAATTATCATCGCAAACATAGAGTTTGTGAAATTCATTCCAAATCTCCTAAGGTGGTTGTAGCTGGCTTGGAGTGTCGGTTTTGCCAGCAATGTAGCAGGTTCCATAATCTGTTTGAATTCGATGAAGAAAAGAGAAGCTGCAGACTACGTCTTTCGCATCACAATGCGAGGCGTCGTAAATATCGTCCTACTGGTGCTGTCCAGTCACGTCAATCATCTTTGATTTCCTCACGACGTGATGGGAAGCAACAGATGAATCCAGTTGCTTATTCAAAGACTAATAAAAATTTAGCCTTGAAAAACATACGCAACAACATGCTCCCCCAAACAAAAGATTTTCTCTTGAAGCCTTCAAAATACAACACTGACATACGAAGCTCCCTTGCTATGCTTTCTGATCATTCCGATGTCCATTTTACTTGCAAAGCCCTTGAACACAAGAGTATCAGTCCAGGCGTAGAAGATTTTCTTACCTTTTCTGATACAAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCATATGCGACTAAATCCATTTCTCTCGATCATTCTAATCGCACAACCAGTAATGCTCAAGCCATAACGCATGCAATGAGTCTGCGCATGCCTCGTGCTTCATCAGAATCATGGTATGGTGATCATGATCAACATGTCAATTCAAGTATGTGGATCTCAAACTCAAACTGTGAAGATAGCAGTCACTTTCAAGAATTTCAGCTGTTCAGAGAACCTTATGTGTCTGGTTTTCACCAGATAGATTAA 1227 0.4124 MDWNAKPPSWMIELDRENNVGLFDMLGGSGYSGSDLILGSTSRSSKSASIGASSNRDSRTKEYPIESSHAPELSSVSGEPLLTLRLGKRMYFEDVSPESDSEYLSYSRDLMSSSLSVGKKCKSNGQNLQSPRCQVEGCGLDLSSAKNYHRKHRVCEIHSKSPKVVVAGLECRFCQQCSRFHNLFEFDEEKRSCRLRLSHHNARRRKYRPTGAVQSRQSSLISSRRDGKQQMNPVAYSKTNKNLALKNIRNNMLPQTKDFLLKPSKYNTDIRSSLAMLSDHSDVHFTCKALEHKSISPGVEDFLTFSDTNATQDFTCALSLLSTNPWDSYATKSISLDHSNRTTSNAQAITHAMSLRMPRASSESWYGDHDQHVNSSMWISNSNCEDSSHFQEFQLFREPYVSGFHQID 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04534 408 SUPERFAMILY SBT domain 131 209 IPR036893 GO:0003677|GO:0005634
Trre7g04534 408 Gene3D - 123 194 IPR036893 GO:0003677|GO:0005634
Trre7g04534 408 ProSiteProfiles Zinc finger SBP-type profile. 130 207 IPR004333 GO:0003677
Trre7g04534 408 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 340 IPR044817 GO:0003677
Trre7g04534 408 MobiDBLite consensus disorder prediction 204 231 - -
Trre7g04534 408 Pfam SBP domain 133 206 IPR004333 GO:0003677
Trre7g04534 408 FunFam Squamosa promoter-binding-like protein 14 124 194 - -
Trre7g04534 408 MobiDBLite consensus disorder prediction 41 74 - -
Trre7g04534 408 MobiDBLite consensus disorder prediction 41 58 - -
Trre7g04534 408 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04534 Trre-Chr7 53381855 53384161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04534 65 212 SBP-box Gene Family AT1G27370 58.784 7.15e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre7g04534 SBP 8.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04534 - - mtr:25501754 421.779