Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04511 ATGGATGCTGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGACAATATTTCCTTCGTTAGAAGCAGCTAGGCCTAGGAGTAAAACCGGAATTCAGGCATTATGTTCATTGCATGTGGCCTTAGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTCTACCTGGCTGTAACTGGGGACTCCGTTCTCACTAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGCCTTAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTTCAAGTGTGGAATTTGCACTTGATCCCTTGGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGCAAAAAGTTTGATGACGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGGGCTGAAGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTGCAGACGACAATGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTATCGAGGATGGTGTTCCTGTTGGTCATAGTCAGGCTTTTGAAAGACAGCTTTCAAAACTTAGTTCCTTTAATTTCAAACCAAATAATAATATGGAGCCGGGGCAAATGGTTCTACCGCCGGAAGAGTTGAGGTGTCCAATATCTCTTCAACTTATGTATGATCCTGTCATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGCATAGAGAAATGGTTCAGTGATGGACACAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAAGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCGGAGTCTACAAATTCAAGATCTGTAAATAGTGTAAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGTTGTATCTCAGAGAATTATGGGGAAAATAGAGCTGAAAGTGTATCTGCACAAGAAGAAGACACTGGGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACGGTTGGAAGAGGAAATATGAAGTGGTGGAACAGTTAAGGCTATTGCTGAGGGATGATGAGGAAGCTAGAATTTTGATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCGGCTGTCCATGAAAGGAATTTGACGGCTCAAGAAAGCGGCGCAATGGCTCTCTTCAACCTAGCTGTGAATAATGACAGAAATAAGGAGATTTTGTTATCTGCTGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACCGGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCCTGCCTTGAAGAAGCCAAACCTATGATTGGCACGAGTCAGGCTGTACAGTTCCTAACCCAGATCCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACCGTGCCTTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAATGGCCTACAGTCCCTTCTTGTAGACCAGGGTGATGATTTTACATGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATGGTGTCAACTCCTGAACTCATTAGTGTGTTGGCTTCAATATTAGACACTGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGCAGTGTTCTGACATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCTCAAGAGGACAAGAAAAAGCTCAAAAACTCTTGATGCTATTCCGACAGCAGCGACGAGATGATTCACCTGTTGAGACACATCAATCTCCTCCTGAAACTAGTGATTTCTCGGTGCCACCTGCTGAAATGAAACCTCTGTGTAAGTCATTGACTAGAAGAAAGACCGGAAAAGGTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2298 0.4151 MDAAEVEENLFAVSDAKLHGQMCKALSIIYCKVLTIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLTKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFSSVEFALDPLEKQVGDDLIALLQQGKKFDDDSESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRNEFADDNDSQGSGPCSPTVQGSIEDGVPVGHSQAFERQLSKLSSFNFKPNNNMEPGQMVLPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFSDGHSNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEESCISENYGENRAESVSAQEEDTGQYLSFLKVLTEGNGWKRKYEVVEQLRLLLRDDEEARILMGANGFVEALVQFLQSAVHERNLTAQESGAMALFNLAVNNDRNKEILLSAGVLSLLEEMISNTGSYGCATALYLNLSCLEEAKPMIGTSQAVQFLTQILQSDYDIQYKQDSLHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQGDDFTWTEKCIAVLINLATSQVGREEMVSTPELISVLASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDDSPVETHQSPPETSDFSVPPAEMKPLCKSLTRRKTGKGFSFFWRSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04511 765 SUPERFAMILY ARM repeat 428 708 IPR016024 -
Trre7g04511 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Trre7g04511 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Trre7g04511 765 SMART arm_5 624 666 IPR000225 GO:0005515
Trre7g04511 765 SMART arm_5 540 581 IPR000225 GO:0005515
Trre7g04511 765 SMART arm_5 455 499 IPR000225 GO:0005515
Trre7g04511 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Trre7g04511 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Trre7g04511 765 PANTHER U BOX DOMAIN-CONTAINING 21 710 - -
Trre7g04511 765 Gene3D - 406 716 IPR011989 -
Trre7g04511 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Trre7g04511 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Trre7g04511 765 MobiDBLite consensus disorder prediction 712 733 - -
Trre7g04511 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
Trre7g04511 765 SUPERFAMILY RING/U-box 276 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04511 Trre-Chr7 53096997 53100848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04511 1 764 U-box Gene Family AT1G24330 64.955 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04511 - - gmx:100794099 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04511 7 53096997 53100848 Trre7g04511 7 53096997 53100848 ECH
Trre5g03116 5 26507147 26510709 Trre7g04511 7 53096997 53100848 PCT