Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04502 ATGCAGTTTGATTCCGATTCAGATTCCGACGGATCTCACATCTCTTCAACTCCTCCAAGACAACCAAATCCACCACCACCACCACCACCAAAACCACCTCTTGCAGTTTCCAACAAAAAAGCCAAAATCAAAACCAAACCCTCAAAATCCAATAAACTCCCTTCAAACCCCCCCGAAACTCTCCCCCAACAAGAACCTGACTCTTTCCCTTCACTTTCCCTCTCTTCCATTCCTTTCCATATCCGACAACGAACCTCCGAAGCTCCTTCAACTTCATCTTCTCATTCCATTGAAACCCTCCCCGCTGGATTCTTCTCCAAATCAATTTCATTCTCCAAAAATCGTAAACCCTTACTCAATCTAGAAGCTTCTGAAAACGAACCGGTAGTTAATTCCCCTAAAGCCGTTGTAAAATCCGCGAAGAAGCATCCTAATTTAATAGGCGCTAGTATGCCAACGCCGATAGTAAAGGTATTACGAGGCGCCGGAGAAGGTAATTTTGTGAAATTGAATTTGAATGGTAAGAGAAAAAAGTTTTTGAACAAAGGTTGGAACAAAAAAGGAAAATTTGGCAGTGGAAAAAGATATAGAAATGGTTATAGTAGTTATAGAAGTAAACGTAAGAAATTGGAAGATGAAGGGGAAGATAATGAGGAAGATGGTTTGGATGAAGAGAATGCAAAGCAACAGGAAAAGCGAAAGGGTTGGGAAAATGAATGCAAAGTGTTGGAGGAGGCTGTGTTAGCGGCAAGAAATGAAGCTTCTGATGAGAATTTGGTGAAGTTGTTGAAATTGATTCATGATTATGATTCTTTTCGAGAGGGACAACTTGAGGCTATCAAGAATGTTCTTGCTGGGAAATCGACTATGCTTATTTTACCGACTGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCATTGATTTTGCCGGGGATTACGCTTGTTGTTAGTCCGTTGATAGCTTTGATGATTGATCAGCTTAGGCAATTGCCTCCGCTCATTTCGGGTGCTCTCCTAAGCAGTTCTCAGACGCTTGAAGAATCATCTGAAACGCTCAGCCAGGTTCGGCAAGGCACAGTTAAGGTGCTTTTTGTTTCACCAGAGCGGTTCTTGAATGAAGAGTTTCTATCTGTTATCTCTGCAGTGTCAGCCGTGTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAAAAGTCTCAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGACGCTGTCATGTCGGCCCTAGATATTCCTTACACAAATCTTATTCAGAATGCACACTTAAGAGACAATTTGCGTTTGTCAGTGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGCTCTGATAAAGTCTTCTCCTTTCACGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATCAGCAGATACTTGAATGATAACAATATCAAGGCAAAGAGTTATCATAGTGGTATATCTGCAAAGGAACGTGGCTACGTACAAGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTGGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCCGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCCGTGAATAAATTTATGTCTGAAGTATTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCTGTTCGTTAATCAAAGAATCTGCTGCACGCAGATTTGATATGAAAGAAGAGGTAATTCTCACAGTTTTGACACGCTTGGAGCTGGGTGACGTGCAATACTTACATTTACTTCCACAAACAAATGCTACCTGTGTTCTGAATTTTCATATGACTCCAGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCTGTGATTCTAAAAAGATCTGAAAATAAGCACGGACAATATATTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTACGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTTTTTTCTCTATCAGCTGATATTACCAAATGGTTATCTGAAGTTGAAAGTTGTAAGGTACGGAAAATGGATGTAATGTTTAATGCTGCATATTTCGCAGTAAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCGATCACACTTCATGCTTGCAAAGGATAATATTGGATTACTTTGGTGGAGTTGATAATATTGATTTCTGCAAGAAAATCAGTCAAAGCAGTCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACATGCTCGTTTTACACCGAGAGCTGTTGCGAGAGTAATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAGGTGGTGATGGAAGCAGCAAAGGAAGAACTCAAAAACTTTATTGGAAAAGATATGCTCTAG 2730 0.404 MQFDSDSDSDGSHISSTPPRQPNPPPPPPPKPPLAVSNKKAKIKTKPSKSNKLPSNPPETLPQQEPDSFPSLSLSSIPFHIRQRTSEAPSTSSSHSIETLPAGFFSKSISFSKNRKPLLNLEASENEPVVNSPKAVVKSAKKHPNLIGASMPTPIVKVLRGAGEGNFVKLNLNGKRKKFLNKGWNKKGKFGSGKRYRNGYSSYRSKRKKLEDEGEDNEEDGLDEENAKQQEKRKGWENECKVLEEAVLAARNEASDENLVKLLKLIHDYDSFREGQLEAIKNVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLIALMIDQLRQLPPLISGALLSSSQTLEESSETLSQVRQGTVKVLFVSPERFLNEEFLSVISAVSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKSLNVGSVLAMTATATTTTLDAVMSALDIPYTNLIQNAHLRDNLRLSVSLIKNRMKDLLALIKSSPFTEVKSIIVYCKFQSETDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFMSEVFPADKSSCGKICSLIKESAARRFDMKEEVILTVLTRLELGDVQYLHLLPQTNATCVLNFHMTPAVSLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGVTPVELTNQLYDLKLKGEITYEMKDMAYCYRILEVPTDFFSLSADITKWLSEVESCKVRKMDVMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILDYFGGVDNIDFCKKISQSSPFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKNFIGKDML 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04502 909 MobiDBLite consensus disorder prediction 18 35 - -
Trre7g04502 909 MobiDBLite consensus disorder prediction 65 96 - -
Trre7g04502 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 248 777 - -
Trre7g04502 909 MobiDBLite consensus disorder prediction 1 17 - -
Trre7g04502 909 Coils Coil 200 253 - -
Trre7g04502 909 MobiDBLite consensus disorder prediction 1 96 - -
Trre7g04502 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 621 IPR001650 -
Trre7g04502 909 Gene3D - 458 640 IPR027417 -
Trre7g04502 909 SMART ultradead3 268 466 IPR014001 -
Trre7g04502 909 CDD SF2_C_RecQ 458 591 - -
Trre7g04502 909 CDD DEXHc_RecQ4-like 260 457 - -
Trre7g04502 909 FunFam ATP-dependent DNA helicase Q4 240 450 - -
Trre7g04502 909 SMART helicmild6 501 582 IPR001650 -
Trre7g04502 909 Pfam DEAD/DEAH box helicase 275 436 IPR011545 GO:0003676|GO:0005524
Trre7g04502 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 450 IPR014001 -
Trre7g04502 909 Pfam Helicase conserved C-terminal domain 484 581 IPR001650 -
Trre7g04502 909 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 387 396 IPR002464 -
Trre7g04502 909 Gene3D - 242 449 IPR027417 -
Trre7g04502 909 NCBIfam RecQ family ATP-dependent DNA helicase 262 620 IPR004589 GO:0004386|GO:0006310
Trre7g04502 909 FunFam ATP-dependent DNA helicase Q-like 5 458 649 - -
Trre7g04502 909 MobiDBLite consensus disorder prediction 203 234 - -
Trre7g04502 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 594 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04502 Trre-Chr7 52976754 52984018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04502 487 614 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 8.71e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04502 K10730 - gmx:100811214 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04502 7 52976754 52984018 Trre7g04502 7 52976754 52984018 ECH