Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04479 ATGAAGCAAGGGTTGATAAAAGGACCATGGTCAAAACAAGAGGATGAAATATTAAAAGAATATGTAAAAATATATGGATCGAAAAATTGGAATGCAGTACAAAGGTTAACTGGACTTCCTCGAGATGGAAAAAGTTGTCGTCTAAGATGGCTTAATCAACTTGATCCATGTTTGAAAAAGGGGAAACTTAGTGAAGAAGAAAAACAGAAAATCCTTCAACTTCGTCAACTTAAAACACCATGGTGTGAAATTGTTAAACAGATTCCTGGAAGAACTGATAATGGGATAAAGAACTTCTTTAATATTAATGAGAGAAAGAAACGTAAAATGGAGAACAACCATGAAGAATGTCGAAAAAAGAAAAAGAAAATAAGTTATTTGCCACTCAACGATGAAATCGTGAAACCACATGATAATGAGTTGAATAACAATGGAGAAAGTAGTGTGGGTGGTTTCAACAACCATCAAGAAGACATTTGCAACATCAATCATCCAATAGACTCAACCCATATTCTAGCTATGCAACCTTCAAATATGTCATGCAATAATGTGGCAAGTACTTCTATAAGCAATATTTCTTCCCCGGCCTTCATTGATAGGGGTGAAGCTCCTTTTATGCCAATTGGCATGGTATCAGATTTGCCTCCATTGCTAGAGATTGAATCTCCACTTCATTCAGACACTTCTATAAGCAATAATTCTTCCCCGACATTTATTAATAGGGGTGAAACTTCTATGAACATGGAACCAAATCTGTCTCCACTTCCAGAAAGTATAAATTTTCAATCTTTTGAATCTCCACTGATTCATAAGTATCCTCCGCTTCCACTTCGATCACCCGAGGAGATTCGACAAGAACAATTAGAACCATATTCTCCATTCAATAATGGTTTGTTGGAATTGGTCAACAATACATCAAAGATTTTGGAAGACTCTAATGGTAGTTACATGAATTCCTGTGAGACAAGATTGGTTGATGAAAATGGGAAGAAGCCGATTTCTTTGAAGAAAGATGAATCAAACAGTGAAGATTTAATAGATTTGTTTGATAGCTTAGGTTGGTTAGATGGTTACATTTTTTGA 1083 0.3527 MKQGLIKGPWSKQEDEILKEYVKIYGSKNWNAVQRLTGLPRDGKSCRLRWLNQLDPCLKKGKLSEEEKQKILQLRQLKTPWCEIVKQIPGRTDNGIKNFFNINERKKRKMENNHEECRKKKKKISYLPLNDEIVKPHDNELNNNGESSVGGFNNHQEDICNINHPIDSTHILAMQPSNMSCNNVASTSISNISSPAFIDRGEAPFMPIGMVSDLPPLLEIESPLHSDTSISNNSSPTFINRGETSMNMEPNLSPLPESINFQSFESPLIHKYPPLPLRSPEEIRQEQLEPYSPFNNGLLELVNNTSKILEDSNGSYMNSCETRLVDENGKKPISLKKDESNSEDLIDLFDSLGWLDGYIF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04479 360 SMART sant 59 106 IPR001005 -
Trre7g04479 360 SMART sant 6 56 IPR001005 -
Trre7g04479 360 Coils Coil 103 123 - -
Trre7g04479 360 CDD SANT 9 52 IPR001005 -
Trre7g04479 360 Gene3D - 63 126 - -
Trre7g04479 360 Pfam Myb-like DNA-binding domain 7 54 IPR001005 -
Trre7g04479 360 Gene3D - 6 59 - -
Trre7g04479 360 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 312 - -
Trre7g04479 360 ProSiteProfiles Myb-like domain profile. 55 101 IPR001005 -
Trre7g04479 360 SUPERFAMILY Homeodomain-like 4 100 IPR009057 -
Trre7g04479 360 CDD SANT 64 101 IPR001005 -
Trre7g04479 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 58 IPR017930 -
Trre7g04479 360 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04479 Trre-Chr7 52802126 52804983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04479 1 109 MYB Transcription Factor Family AT2G32460 49.091 2.21e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre7g04479 Myb_DNA-binding 8.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04479 K09422 - tpra:123888557 422.55