Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04474 ATGGGTCGTCGCAAAATTGAGATTGAGATTGTGAAAGACCCCAACACGAGGCAGGTTACATTCTCAAAGCGTCGAACAGGCTTATTCAAGAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTCGCTATTGTTGTGTTTTCTCCAGGGAACAAGCCTTACTCTTTTGGTCACCCAGGAGTTGATATTGTTGCGGCCAAGTATCTTCAACAAGATCTTGAATCAAGTGACTCCCAAGGAGACCCCTCTTCTGATACTTCCAATATGGAGGATCTTGAACCAAGTGACTCCCAAGGAGACCCCTCTTCTGATACTTCCAATATGGAGAAGTTGAATCTGGAACTTGCTGAGGTATTGGCTGAAATTCGTGAGGGTGAAAAGGAGACTGAAACTTATGATGAGATCTTGAAGCAAAATAATGCGACAACACTCTCCGAACTTGAAGAATTGAGAGATTTATACAAAGGGCTTCAAGATTGGGTAAAATTGTGTCTTAGTGATATCGAGATATCAGAATATATGATGTTGCTTGCTAAGGAACCAGTGGTAGGAGTTAAAGCAAAATCTGCAAAAAAGAATAGAAGAAATTGA 594 0.4074 MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDIVAAKYLQQDLESSDSQGDPSSDTSNMEDLEPSDSQGDPSSDTSNMEKLNLELAEVLAEIREGEKETETYDEILKQNNATTLSELEELRDLYKGLQDWVKLCLSDIEISEYMMLLAKEPVVGVKAKSAKKNRRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04474 197 Coils Coil 109 129 - -
Trre7g04474 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre7g04474 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre7g04474 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre7g04474 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre7g04474 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g04474 197 MobiDBLite consensus disorder prediction 73 108 - -
Trre7g04474 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trre7g04474 197 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Trre7g04474 197 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre7g04474 197 PANTHER MADS BOX PROTEIN 3 152 - -
Trre7g04474 197 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Trre7g04474 197 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04474 Trre-Chr7 52731007 52731600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04474 1 180 Type I MADS-box Gene Family AT2G34440 42.703 9.11e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g04474 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04474 - - mtr:11439559 271.937