Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04471 ATGAAACTTTCTTCAGCTGGGTTTAGTCCTCCACCTGAGGAAGGCGAAAAACGGGTTTTAGATTCGGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCGGCTGATGGAAGCCGCGTCGTTTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATCCCGAATCCAAGTTTACCTCCCCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAGATGACCTTGCAGCCTCTAAATCCTGAAGAGCAAAAAGAGGCATATCATCCCGCAGAATTGGGAACTGCAAACAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGATACAAGTACTCATGGTGGATTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGAGATTTACATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGCCAGCCCAAAAGGCATTTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGACAAAAATCAATTGCTACTTGGCATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTAGGGTTGCTGGCTGCTGCAGCTCATGCAGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTATATCATACTCGGGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAAGAATCTAGTGTTCGGCGATACATGGGAACAATAACGGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTAAAGGTTGGCTGGGACGAATCCACTGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACGTTTCCGATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGATTGCCTGCATTCCATGCAGGCTTGAAGGAGGATGATTATGGCATGAATTCTCCATTATTGTGGCTTCGAGATGCAGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGCTAGATCCGTCCATGATGAATATGCAACCAGACATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGAACTTTAGATCCTTCTAAACAGCACCCCGCCTCCTTACTTCAATTTCAGCCGCCACAGAATTTCACCAATGGTACTGCGGCTTTAATGCAAAACCAGATGTTGCAGCAATCACAACCTCAGCAGGCTTTTTCAAAGAATCAAGAAAGTCAGCTTCCATCTCAATCTCAGGCCCAAACACAAAATTTTCAGCAGCTTCTTCAGAATCAGCACTCATTCACTAATCAAAATTATCAACATCTGCAGCAACAGCAACAACTACAACAACAACAGCAGCAACAACAACAACAACAGCAGCAACAACATCATCAACAACAACAACAGCAACAGCAACAACAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAAGTTGTAGATCGTCAGCAAATTTCAAATGCTGTGTCTACAATGTCTCAGTTTGTTTCGGCACCACAATCTCAATCAACGCAGCCCATGCAAGCTATCTCTTCAATTGGCAATCATCAACATTTTTCTGATTCAAATGGGAACCCTGCAACTACTGCTGTTGTTTCTCCTTTGCACAATATGTTAGGTTCATTTCCCAATGACGAAACATCTCACCTTCTCAACCTTCCTAGACAAAATTCTTGGGTTCCTGTTCAATCTTCAACTGCATGGCCTTCGAAGCGCATTGCAGTTGATCCTCTCCTTTCTTCCGGAGCATCTCATTATGTTCTGCCTCAAGTGGAGCAGCTAGGGCAGTTACAGACTACCATGTCTCAAAATGCTATTACCTTGCCCCCATTTCCTGGTAGGGAGTGTACAATAGAAGCGAACACCGATCCACAAAACCATTTGTTGTTTGGTTTTAACATAGAGCCTTCATCACATCTAGTTTATAATGAGATGTCAAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAGCTGTACCTTTTCAATCTTCTACGTACCTGAATACAACAGGTGCCGATTCTTCATTGAATCCTGGAATGACACACAGCATTGGTGAGTCGGGCTTCCTGCAAACTCCAGAAAATGGAGGTCAAGGGAACCCACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCCAACTACCCCGAGCTACGTAGTGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGACGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAGCAAATGGGGAACACTGGTCTAGAACTTCTGAACTCAGCTCCAACTCAGAGGCTCTCCAATGGAATCTGTGATGACTATACCGGCCGTGAGGACTCAAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 2850 0.4488 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPAFHAGLKEDDYGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQPPQNFTNGTAALMQNQMLQQSQPQQAFSKNQESQLPSQSQAQTQNFQQLLQNQHSFTNQNYQHLQQQQQLQQQQQQQQQQQQQQHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVDRQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNHQHFSDSNGNPATTAVVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRIAVDPLLSSGASHYVLPQVEQLGQLQTTMSQNAITLPPFPGRECTIEANTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSAVPFQSSTYLNTTGADSSLNPGMTHSIGESGFLQTPENGGQGNPPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNTGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04471 949 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre7g04471 949 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 593 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g04471 949 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g04471 949 CDD B3_DNA 125 226 IPR003340 GO:0003677
Trre7g04471 949 FunFam Auxin response factor 290 362 - -
Trre7g04471 949 FunFam Auxin response factor 124 228 - -
Trre7g04471 949 Gene3D - 290 362 - -
Trre7g04471 949 Coils Coil 527 590 - -
Trre7g04471 949 ProSiteProfiles PB1 domain profile. 817 901 IPR000270 GO:0005515
Trre7g04471 949 FunFam Auxin response factor 813 906 - -
Trre7g04471 949 MobiDBLite consensus disorder prediction 457 473 - -
Trre7g04471 949 SUPERFAMILY CAD & PB1 domains 813 892 - -
Trre7g04471 949 Gene3D - 124 227 IPR015300 -
Trre7g04471 949 SMART B3_2 126 228 IPR003340 GO:0003677
Trre7g04471 949 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre7g04471 949 MobiDBLite consensus disorder prediction 483 508 - -
Trre7g04471 949 Gene3D - 814 906 - -
Trre7g04471 949 Pfam AUX/IAA family 814 902 IPR033389 -
Trre7g04471 949 MobiDBLite consensus disorder prediction 454 473 - -
Trre7g04471 949 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Trre7g04471 949 MobiDBLite consensus disorder prediction 783 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04471 Trre-Chr7 52661943 52667407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04471 1 483 B3 DNA Binding Superfamily AT1G30330 84.458 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g04471 AUX_IAA 2.9e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04471 - - vvi:100260866 1107.43