Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04470 ATGAAACTTTCTTCAGCTGGGTTTAGTCCTCCACCTGAGGAAGGCGAAAAACGGGTTTTAGATTCGGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCGGCTGATGGAAGCCGCGTCGTTTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATCCCGAATCCAAGTTTACCTCCCCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAGATGACCTTGCAGCCTCTAAATCCTGAAGAGCAAAAAGAGGCATATCATCCCGCAGAATTGGGAACTGCAAACAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGATACAAGTACTCATGGTGGATTCTCTGTTCCTCGCCGAGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGAGATTTACATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGCCAGCCCAAAAGGCATTTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGACAAAAATCAATTGCTACTTGGCATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTAGGGTTGCTGGCTGCTGCAGCTCATGCAGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTATATCATACTCGGGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAAGAATCTAGTGTTCGGCGATACATGGGAACAATAACGGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTAAAGGTTGGCTGGGACGAATCCACTGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACGTTTCCGATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGATTGCCTGCATTCCATGGCTTGAAGGAGGATGATTATGGCATGAATTCTCCATTATTGTGGCTTCGAGATGCAGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGCTAGATCCGTCCATGATGAATATGCAACCAGACATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGAACTTTAGATCCTTCTAAACAGCACCCCGCCTCCTTACTTCAATTTCAGCCGCCACAGAATTTCACCAATGGTACTGCGGCTTTAATGCAAAACCAGATGTTGCAGCAATCACAACCTCAGCAGGCTTTTTCAAAGAATCAAGAAAGTCAGCTTCCATCTCAATCTCAGGCCCAAACACAAAATTTTCAGCAGCTTCTTCAGAATCAGCACTCATTCACTAATCAAAATTATCAACATCTGCAGCAACAGCAACAACTACAACAACAACAGCAGCAACAACAACAACAACAGCAGCAACAACATCATCAACAACAACAACAGCAACAGCAACAACAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAAGTTGTAGATCGTCAGCAAATTTCAAATGCTGTGTCTACAATGTCTCAGTTTGTTTCGGCACCACAATCTCAATCAACGCAGCCCATGCAAGCTATCTCTTCAATTGGCAATCATCAACATTTTTCTGATTCAAATGGGAACCCTGCAACTACTGCTGTTGTTTCTCCTTTGCACAATATGTTAGGTTCATTTCCCAATGACGAAACATCTCACCTTCTCAACCTTCCTAGACAAAATTCTTGGGTTCCTGTTCAATCTTCAACTGCATGGCCTTCGAAGCGCATTGCAGTTGATCCTCTCCTTTCTTCCGGAGCATCTCATTATGTTCTGCCTCAAGTGGAGCAGCTAGGGCAGTTACAGACTACCATGTCTCAAAATGCTATTACCTTGCCCCCATTTCCTGGTAGGGAGTGTACAATAGAAGCGAACACCGATCCACAAAACCATTTGTTGTTTGGTTTTAACATAGAGCCTTCATCACATCTAGTTTATAATGAGATGTCAAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAGCTGTACCTTTTCAATCTTCTACGTACCTGAATACAACAGGTGCCGATTCTTCATTGAATCCTGGAATGACACACAGCATTGGTGAGTCGGGCTTCCTGCAAACTCCAGAAAATGGAGGTCAAGGGAACCCACCAAACAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCCAACTACCCCGAGCTACGTAGTGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGACGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAGCAAATGGGGAACACTGGTCTAGAACTTCTGAACTCAGCTCCAACTCAGAGGCTCTCCAATGGAATCTGTGATGACTATACCGGCCGTGAGGACTCAAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 2847 0.4485 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPAFHGLKEDDYGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQPPQNFTNGTAALMQNQMLQQSQPQQAFSKNQESQLPSQSQAQTQNFQQLLQNQHSFTNQNYQHLQQQQQLQQQQQQQQQQQQQQHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVDRQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNHQHFSDSNGNPATTAVVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRIAVDPLLSSGASHYVLPQVEQLGQLQTTMSQNAITLPPFPGRECTIEANTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSAVPFQSSTYLNTTGADSSLNPGMTHSIGESGFLQTPENGGQGNPPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNTGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04470 948 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre7g04470 948 MobiDBLite consensus disorder prediction 482 507 - -
Trre7g04470 948 ProSiteProfiles PB1 domain profile. 816 900 IPR000270 GO:0005515
Trre7g04470 948 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g04470 948 SUPERFAMILY CAD & PB1 domains 812 891 - -
Trre7g04470 948 Coils Coil 526 589 - -
Trre7g04470 948 CDD B3_DNA 125 226 IPR003340 GO:0003677
Trre7g04470 948 FunFam Auxin response factor 290 362 - -
Trre7g04470 948 FunFam Auxin response factor 124 228 - -
Trre7g04470 948 MobiDBLite consensus disorder prediction 456 472 - -
Trre7g04470 948 Gene3D - 290 362 - -
Trre7g04470 948 Gene3D - 124 227 IPR015300 -
Trre7g04470 948 SMART B3_2 126 228 IPR003340 GO:0003677
Trre7g04470 948 FunFam Auxin response factor 812 905 - -
Trre7g04470 948 MobiDBLite consensus disorder prediction 453 472 - -
Trre7g04470 948 MobiDBLite consensus disorder prediction 782 815 - -
Trre7g04470 948 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 593 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g04470 948 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre7g04470 948 Pfam AUX/IAA family 813 901 IPR033389 -
Trre7g04470 948 Gene3D - 813 905 - -
Trre7g04470 948 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04470 Trre-Chr7 52661943 52667407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04470 1 482 B3 DNA Binding Superfamily AT1G30330 84.631 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g04470 AUX_IAA 2.9e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04470 - - vvi:100260866 1110.13