Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04418 ATGAAGAGAGAGCATAAGCAAGAACATGAAGATGCTACTATGAGTAGTAAATCAGAGATTTGTTGGGAAGATGATGGTGGTATGGATGAACTTTTAGCAGTGGTTGGTTACAAAGTGAAATCATCAGACATGGCTGAAGTTGCTCAAAAGCTTGAACAACTTGAACAAGCTATGGGTAATTTTCAAGACCAAGATGAATTAACCATCGCTCAACAACTATCAAACGACACCGTTCATTACAATCCTTCTGATATTTCCAACTGGCTTCAAACTATGCTTTCCAATTTTGACCCTCAACCTAATAATCCAACGGTTTCATCTTCTTCCGATAATGACCTCAACGCCATTCCCGGTAAAGCTATTTACGCCAACACTGTTGTAACTACCTCACCACAACAACAACAAGATGATGTTGTCGATGATGATGATGATGATGATGATGATTTTCCTTCTCGTAAACGAGTTAAACGAACTGATTCCACTGAGTCAACTCGTCCTGTTGTAATGGTGGTTGAAACGCAAGAAAAAGGGATTCGTCTTGTTCACACTTTAATGGCTTGTGCTGAAGCAGTTGAACAGAACAATCTAACGGTCGCGGAAGCTTTGGTGAAACAGATCGGTTACCTAGCGGTGTCACAAGAAGGTGCTATGAGAAAAGTTGCTACGTATTTCGCTGAAGGTTTAGCTCGACGAATCTACGGTGTGTTTCCACAGCATTCTGTTTCCGATTCGCTTCAGATCCATTTCTATGAAACTTGTCCTTATCTGAAATTCGCTCATTTCACTGCGAATCAAGCTATTCTTGAAGCTTTTCAAGGAAAATCTAGGGTTCATGTTATTGATTTCTCGATTAATCAAGGGATGCAGTGGCCGGCGCTTATGCAGGCACTTGCGTTACGTCCTGGTGGTCCACCTGCTTTTCGTCTCACCGGAATTGGTCCTCCGGCGTCGGATAATTCCGATCATCTTCAACAGGTTGGTTGGAGACTTGCTCAGTTTGCTCAAACGATTCATGTTCAGTTTGAGTATCGTGGTTTTGTTGCTAATAGTCTCGCTGATCTTGATGCTTCTATGCTTGAACTACGTTCACCGGAAACTGAATCTGTTGCTGTTAACTCTGTTTTTGAGCTTCATAAACTCAACGCGCGTCCCGGTGCGCTTGAGAAAGTTTTTTCTGTTATCCGTCAGATTCGACCGGAGATTGTTACCGTTGTTGAACAAGAAGGGAATCACAACGGACCGGCTTTTCTAGACCGGTTTACTGAGTCACTTCATTATTACTCGACTCTGTTTGACTCGCTTGAAGGTTCATTGGTTGAACCGCAAGACAAGGCTATGTCGGAGGTTTATTTAGGGAAACAAATCTGCAACGTGGTGGCGTGTGAAGGAACGGACCGGGTTGAACGTCATGAGACTTTGAACCAGTGGAGGAACCGGTTCGGTTCAGCTGGATTTTCACCGGTTCATTTGGGTTCTAACGCGTTTAAACAAGCGAGTATGTTGTTAGCACTTTTCGCTGGTGGGGATGGTTACAAGGTGGAAGAGAATGATGGTTGTCTCATGCTTGGTTGGCACACTAGACCTTTAATCGCTACATCTGCTTGGAAACTCGCCGCCGTTAACTCAGTGGTGGTTTCACACTGA 1644 0.4373 MKREHKQEHEDATMSSKSEICWEDDGGMDELLAVVGYKVKSSDMAEVAQKLEQLEQAMGNFQDQDELTIAQQLSNDTVHYNPSDISNWLQTMLSNFDPQPNNPTVSSSSDNDLNAIPGKAIYANTVVTTSPQQQQDDVVDDDDDDDDDFPSRKRVKRTDSTESTRPVVMVVETQEKGIRLVHTLMACAEAVEQNNLTVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYGVFPQHSVSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVIDFSINQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQQVGWRLAQFAQTIHVQFEYRGFVANSLADLDASMLELRSPETESVAVNSVFELHKLNARPGALEKVFSVIRQIRPEIVTVVEQEGNHNGPAFLDRFTESLHYYSTLFDSLEGSLVEPQDKAMSEVYLGKQICNVVACEGTDRVERHETLNQWRNRFGSAGFSPVHLGSNAFKQASMLLALFAGGDGYKVEENDGCLMLGWHTRPLIATSAWKLAAVNSVVVSH 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04418 547 MobiDBLite consensus disorder prediction 1 21 - -
Trre7g04418 547 ProSiteProfiles GRAS family profile. 171 536 IPR005202 -
Trre7g04418 547 SMART DELLA_2 29 106 - -
Trre7g04418 547 FunFam DELLA protein GAI 27 96 - -
Trre7g04418 547 Pfam GRAS domain family 180 536 IPR005202 -
Trre7g04418 547 Pfam Transcriptional regulator DELLA protein N terminal 29 100 IPR021914 -
Trre7g04418 547 Gene3D - 27 96 IPR038088 -
Trre7g04418 547 MobiDBLite consensus disorder prediction 126 164 - -
Trre7g04418 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 120 532 IPR005202 -
Trre7g04418 547 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04418 Trre-Chr7 52058741 52060384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04418 23 538 GRAS Transcription Factor Family AT1G14920 68.679 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre7g04418 GRAS 8e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04418 K14494 - gmx:547718 793.497