Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04405 ATGGGATGTCTTGGAATTAAGAACCATAAACAACAACAACAAGACACAATTTCCATGGACAAATCACATAGCTTTCTTCATAGTCTTATTAAACACTTCAAATTTGGTTCCACCACAGAGAGAAATAATGAAGTTGATTTACAAAGAATGGCTTCACAGGAGCAGAAGATATTTTCTTATGAAACCCTTGTTTCTGCCACTAAGAATTTTAATGCTGTTCATAAGTTAGGTGAGGGAGGTTTTGGACCTGTTTTCAAGGGGAAATTGAGTGATGGGAGAGAAGTTGCAGTGAAGAAGTTATCACAGACATCAAATCAAGGGAAAAAGGAGTTTATGAATGAGGCAAAGTTGTTGGCTCGTGTGCAGCATAAGAATGTTGTGAATTTGTTAGGTTATTGTGTTCATGGAGCAGAGAAGTTACTTGTTTATGAGTATGTTCCTCATGAGAGCCTTGACAAGCTTCTTTTCAAATCTGTAGATAAGAGGGAGCAGCTTGATTGGAAACGTAGGTTTGGGATAATCACAGGCGTGGCAAAGGGATTACTTTATCTCCACGAAGACTCGCACCATTGCATAATCCATAGAGACATCAAAGCAAGTAATGTATTGCTTGATGACAAATGGACGCCCAAGATTGCTGATTTTGGAATGGCACGTCTCTTCCCCGAAGATCAAAGTCAAGTCAATACGCGTGTGGCTGGTACCAATGGATATATGGCTCCTGAATATATGATGCATGGAAGACTTTCTGTCAAAGCTGACGTGTTTAGCTATGGAGTTTTGCTATTGGAGTTGATCACCGGCCAACGAAACTCTTCCTTTAATTTGGATGTGGAGCACCATAGCCTTCTCGATTGGGCATACAAGATGTACAAGAAAGGGAGGAGCTTAGAAATTGTTGATTCTACATTAGCATCTACAGTGTTAACAGAACAAGTAGCTATGTGCATTCAGCTTGCTCTGCTATGCACTCAAGGAGATCCACATCTACGTCCGACAATGAGACGAGTAGTGGTTATGCTATCAAGAAAATCACCACAAAGCCACATGGAAGAACCAACAAGACCAGGAGTACCAGGTAGCAGATATAGAAGACCTCCTGGACATTCTGGTTTGTCTTCTACAGTTGGTAGTGGTGCGTCTTATTCTCGATCTTTTGATTCAAGCAACAACTGTACCACGCATACAAACACCGCAACTGGTACAAGTTCAGCTACTGCTGAATTAGATATTAGAGGGAAACGTCCAATGCAAGATTAG 1260 0.4095 MGCLGIKNHKQQQQDTISMDKSHSFLHSLIKHFKFGSTTERNNEVDLQRMASQEQKIFSYETLVSATKNFNAVHKLGEGGFGPVFKGKLSDGREVAVKKLSQTSNQGKKEFMNEAKLLARVQHKNVVNLLGYCVHGAEKLLVYEYVPHESLDKLLFKSVDKREQLDWKRRFGIITGVAKGLLYLHEDSHHCIIHRDIKASNVLLDDKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYMMHGRLSVKADVFSYGVLLLELITGQRNSSFNLDVEHHSLLDWAYKMYKKGRSLEIVDSTLASTVLTEQVAMCIQLALLCTQGDPHLRPTMRRVVVMLSRKSPQSHMEEPTRPGVPGSRYRRPPGHSGLSSTVGSGASYSRSFDSSNNCTTHTNTATGTSSATAELDIRGKRPMQD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04405 419 Gene3D Phosphorylase Kinase; domain 1 32 145 - -
Trre7g04405 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Trre7g04405 419 Gene3D Transferase(Phosphotransferase) domain 1 146 355 - -
Trre7g04405 419 MobiDBLite consensus disorder prediction 371 407 - -
Trre7g04405 419 FunFam Cysteine-rich receptor-like protein kinase 10 34 145 - -
Trre7g04405 419 SMART serkin_6 70 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04405 419 SUPERFAMILY Protein kinase-like (PK-like) 54 343 IPR011009 -
Trre7g04405 419 Pfam Protein tyrosine and serine/threonine kinase 73 340 IPR001245 GO:0004672|GO:0006468
Trre7g04405 419 ProSiteProfiles Protein kinase domain profile. 70 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04405 419 CDD STKc_IRAK 76 343 - -
Trre7g04405 419 MobiDBLite consensus disorder prediction 343 419 - -
Trre7g04405 419 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 396 - -
Trre7g04405 419 FunFam Cysteine-rich receptor-like protein kinase 10 147 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04405 Trre-Chr7 51901530 51905263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04405 58 357 Receptor kinase-like Gene Family AT4G11530 52.318 9.66e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre7g04405 PK_Tyr_Ser-Thr 6.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04405 - - gmx:100795769 650.203