Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04398 ATGTGTATGACCATCGAAAATGAGCATCAGTTTTCATCATTTGCTGAAATTAATTCAACTAGGTCAAGTTGGAATTGTAGGGCAATGATCACCCGACTTTGGCAAACTTCTAATTCCAATCGAAACACATTGCCTTTTTCTATTGAAATGGTTTTAATGGATTCTTATGGTGGTAAAATTCATGCTACAGTTAAAACAACTCTTATTTATAAATTTAAGGATGGGCTAATAGAGGGAAAAGTTTATACTTTTGAGAAGATGGGAGTCTCACCTAATGTTGGAGCTTATCGTACCACTCTTCACAGTTTTAAGTTAAATTTCAAAGCCACTACATTAGTTCAAAGACTTTTTAATCAAGACATTGTTAGATCTTCATATAACTTTGTTCCAATTGGACAAATTGTAGGAGGCTCTTATGACACTGATTTCTTAGTTGATGTTATTTGA 447 0.3311 MCMTIENEHQFSSFAEINSTRSSWNCRAMITRLWQTSNSNRNTLPFSIEMVLMDSYGGKIHATVKTTLIYKFKDGLIEGKVYTFEKMGVSPNVGAYRTTLHSFKLNFKATTLVQRLFNQDIVRSSYNFVPIGQIVGGSYDTDFLVDVI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04398 148 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre7g04398 148 Gene3D - 9 115 IPR012340 -
Trre7g04398 148 SUPERFAMILY Nucleic acid-binding proteins 10 117 IPR012340 -
Trre7g04398 148 CDD RPA1_DBD_A_like 27 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04398 Trre-Chr7 51838980 51839513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04398 3 148 Core DNA Replication Machinery Family AT2G06510 24.503 7.36e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04398 - - tpra:123886531 192.2