Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04396 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCAGTCAGAAGCACACCTTGTTCATCAAGATTCTATGACCCTTGATTTGACACTCAATTTCAGTTCCAGTGACAGCGAGTTAAAGGGTTCGAGTGATGCTAGTAGCGAAGTAGGAGCTGGTGAAGATAACGCTGCTGCGCCAAATGTAACTCCGAGGGTTTTCTCTTGTAATTACTGCAAGAGGAAGTTCTTTAGCTCGCAAGCGTTAGGAGGTCATCAAAATGCTCACAAAAGGGAAAGAACGATGGCTAAACGCGCGATGAGAATGGGAATGTTCACCGAGAGGTATACAAGCCTAGCATCTCTGCCTCTTCATGGTTCGCCTTTTCGGTCCCTCGGTGTTGAAGCTCATTCGGCAATGCATCAAAGAAGTCATATGCAACCATCATCATCAATGAGGGCTCCTGATATGAGACCTGCTGCAAAATTTGATAGAAACCACTTCGGATCATTAGTTCTCGTGGAAGACGATGATGTAGGATTCTTTTGGCCCGGAAGTTTCAGACAAGTGGATCAAGGAGGTGGTATTCATATAGGACAACCTCAAACTTCAAATTCTAGTTTTGTTCCAATGGAACCTCCTCCGCCGCAAGCATCTGCATCTCCTGATCTCACATTAAAGTTATAA 663 0.4434 MMTPNLNLEPENQSEAHLVHQDSMTLDLTLNFSSSDSELKGSSDASSEVGAGEDNAAAPNVTPRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGVEAHSAMHQRSHMQPSSSMRAPDMRPAAKFDRNHFGSLVLVEDDDVGFFWPGSFRQVDQGGGIHIGQPQTSNSSFVPMEPPPPQASASPDLTLKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04396 220 MobiDBLite consensus disorder prediction 184 220 - -
Trre7g04396 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Trre7g04396 220 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Trre7g04396 220 SUPERFAMILY beta-beta-alpha zinc fingers 63 94 IPR036236 -
Trre7g04396 220 FunFam Zinc finger protein 2 42 112 - -
Trre7g04396 220 MobiDBLite consensus disorder prediction 35 58 - -
Trre7g04396 220 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 164 IPR044246 GO:0009788
Trre7g04396 220 Gene3D Classic Zinc Finger 58 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04396 Trre-Chr7 51807849 51808511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04396 59 220 C2H2 Transcription Factor Family AT1G66140 44.624 3.90e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g04396 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04396 - - gmx:100775305 323.553