LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g04390	ATGGGAAGAGTTCGCACAAAAACCGTCAAGAAATCCTCCCGTCAAGTCATCGAGAGGTACTACTCTCGAATGACACTCGATTTCCACACCAACAAGAAAATCCTCGAAGAAGTTGCTCTCATTCCATCAAAGCGTCTCCGTAACAAGATCGCTGGATTCTCCACTCATCTCATGAAGCGTATCCAGAAAGGACCAGTTCGTGGAATCTCATTGAAGCTGCAAGAGGAAGAGCGTGAGCGTCGTATGGATTTCGTTCCCGATGTTTCCGCCATTAGGACTGATCACATCGAAGTTGATAAGGAAACCCTAGACATGATTGCTGCACTCGGTATGGCTGAACTTCCCGGTGTTGTTCAGGTTGATCCAGTTCCGGTTCAGCAGATCCCATTCGGACGTGGTGCTGGTGGTGCTGGCGGAAGGAGAACTATGCGAATCCTTAGCTTCCACATTGTTTGGAGCACCACCTATTCCATCGGCTACTACATCAACACTCGATCCATATGTCCATCTTCTCAGTCACGACCTTTTGGTCATGGTTGA	540	0.4833	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIEVDKETLDMIAALGMAELPGVVQVDPVPVQQIPFGRGAGGAGGRRTMRILSFHIVWSTTYSIGYYINTRSICPSSQSRPFGHG	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g04390	179	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g04390	179	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g04390	179	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g04390	179	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g04390	179	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g04390	179	PANTHER	40S RIBOSOMAL PROTEIN S17	1	123	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Trre7g04390	179	FunFam	40S ribosomal protein S17	1	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g04390	Trre-Chr7	51715800	51721853	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g04390	1	141	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	79.021	3.51e-76	223

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g04390	K02962		-	cpap:110810532	237.654