Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04378 ATGCAACTTCCCATTGCTGTTGCTGTTGCAGTAACAACATCACTCGTTGCATTATTCATCATCGGATTCTTCATCTTCCGGTGTCTAAAAAAACCTACAGCAAGAGACAACAAAACTCAAGAACCTCAAAACACGTGTCTTCACTTTTCCATCGAAGAAATAAGAACCGCCACTAAAAACTTCAACGACAGTTTAATCATCGGCAACGGAGGTTTCGGAAACGTTTACAAAGGAAACATTGAAAGATGTCACGTGCCGGTTGCCATTAAGCGGCTCAGACCGGGTTCAGATCAAGGCGCACATGAGTTTCGAACCGAAATCGAAATGCTTTCACGGTTTCGTCACCCTCACTTGGTTTCTCTCATTGGTTACTGTAACGAAGGTGGAGAAATGATTCTTGTTTACGATTTCATGGCGCGTGGTACACTACGCGATCATCTATACGGTTCAGAAAGTTCGCTCTCGTGGAATCGACGGCTTGAGATCTGTCTCGGTGCAGCGCGTGGGATTCAGTTTCTACACGCGGGTGTTAATGATGATAAACGGATGGTTATTCACCGTGACGTGAAGAGTACGAATATTCTCTTGGATGAGACCATCAACAATGGTAAACACCCCACAACATCCTCAACACTCACTTTTTACACTCCACATCATCTTCTCTCTCTTCCACCTAATCATTCAACACTCCATTCAACTTTTACCTCTCCAATAGTTTTTTCATTCAACACCCTACCCCACCACATTCTCTACCCCACCACTTTTTATTTCATATTCTTATTTAAATTTTTATATTTATTTTTTATGATTAAATAA 816 0.4167 MQLPIAVAVAVTTSLVALFIIGFFIFRCLKKPTARDNKTQEPQNTCLHFSIEEIRTATKNFNDSLIIGNGGFGNVYKGNIERCHVPVAIKRLRPGSDQGAHEFRTEIEMLSRFRHPHLVSLIGYCNEGGEMILVYDFMARGTLRDHLYGSESSLSWNRRLEICLGAARGIQFLHAGVNDDKRMVIHRDVKSTNILLDETINNGKHPTTSSTLTFYTPHHLLSLPPNHSTLHSTFTSPIVFSFNTLPHHILYPTTFYFIFLFKFLYLFFMIK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04378 271 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Trre7g04378 271 Gene3D Phosphorylase Kinase; domain 1 26 137 - -
Trre7g04378 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Trre7g04378 271 Pfam Protein tyrosine and serine/threonine kinase 67 199 IPR001245 GO:0004672|GO:0006468
Trre7g04378 271 ProSiteProfiles Protein kinase domain profile. 61 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04378 271 PANTHER OS07G0166700 PROTEIN 45 201 IPR045272 GO:0004714|GO:0006468
Trre7g04378 271 FunFam Receptor-like protein kinase FERONIA 33 137 - -
Trre7g04378 271 SUPERFAMILY Protein kinase-like (PK-like) 40 200 IPR011009 -
Trre7g04378 271 Gene3D Transferase(Phosphotransferase) domain 1 138 210 - -
Trre7g04378 271 SMART serkin_6 61 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04378 Trre-Chr7 51618431 51619246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04378 42 198 Receptor kinase-like Gene Family AT3G51550 62.658 2.66e-62 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre7g04378 PK_Tyr_Ser-Thr 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04378 - - cam:101489535 302.367