Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04351 ATGAGAGAGAGTAAGGAGAGAGAAATAGGGGTTTTGGGAGGCTCTGCTAGGGCAAATGGGGGGAAAAGAAATGGCTTTTTTCATCATCTTGACAAGGTGACAACATCTTTTTTCATCACCAATTTCCCAGAGGAGTCAACGACTGGTGATCTTTGGAAATTATTTCTGAAGTATGGTAGGGTTGTGGAGGTTTACATTCCAAAGAAGCTTGACAAGAGGGGTAGGAGATTTGGATTCGTAAAGTTCAAGGAGGTAGAAGATGTGGAGGAGCTTTCTGAAAGGCTGAGAGATGTGTGGATAGGCTCATTCAAAATATGGGTTAATCGTTCACGTTTTGCTAGGTCAGAAAACAAGGAAGAACTTACTCAACAAACCCCAGCTTCTCGACCGGCGCTACCAGTGGGAGAGAGGCGACAGGGGAGGTCTTTCAAATCAGCATTGTTGGAGAATGGAGTTTCTACAGAAGTGATCAAGGTTCCGGTCAATGAAGAACTCAGTAAGGAGTTGAGAGGAAGTGTGGTTGGAAGTCTAGCAAGAGAAAGGAATGTGAAACGTATTCAAACTACGTTGTTCATGGAAGGTTTTCCTTCTATCTCGGTCACACATATGGGAGATAACAAGGTGCTGATGCGGAGTCCGGTGGAAGGGGATGTGGAGCGGCTGATGAAGAGTAAGAATGAATGCCTCAAGTATTATTTTTCAGAGATTAAGCCATGGAACCCAGGCTTGACAGCGGCCCAGAGAGAGGTTTGGGTGCAAATTTATGGTATCTCTGTACACATATGGGGAGATGATCTGTTCAAGTTGGTTGGGAAGCGGTTTGGGGTGTTTTTGGATTATGATGAAGAGACTGTCCGGATGAAAAGGTTGGATGTGGCAAGAATCAAAATCCTTACTACAGTCTGGGCCTCCATTGATGTGGTTCTTAAGGTGGAAGTAGAAGGGTTGTTTTTTGACCTTTGGGTGGTGGAGGAAAGGGAAAGGAAGGTCCCGTTGGTGGCCCTTAACGAAGAGATGGAAGATGAAGGAAGTAGGGTGGTTCCGGCGGAGGAATCAGTTGGGGGTGAGGAGGCTTATGGGGAAGGAGCTCTTAACTCCGGCGAGGATGATGAATCCGGTGAAGAGATTGATGCTGACGTGGTGATCGGGGAGGGGCACGAGAATGAAAACGATGGGACAAAGGGATCACAAAAGCTTAATGAAGAGGGGAAAGCTCTGACTTGTACAAAGTCAAAGGAATTTGTTAACACAAATATGGAAATTCCTTATGCTCCCCAAGCTGTAGCAGAGAAAGTGGATCAGGTGGAGCAGGTTTTGTCTTTGGCATCTTCTGAAGAGGTGGGCGTTAGAAACGAAATAGGAGTGTGTGGGTCCAAGCTGATAGAGGAGACAAAATCAATTTTAGAGAATGTTGGAACAGGTGGTCCCCACTTGGTTGTGGGTAATTTAAATGATGTGGCGGGTTACCAAGGTCCGATTTCTGACCCATGTGACATGGGCCGTGGTGAGCCCAATGGAGCGGAATTGGATCGTTCTTTTCGGGGGGTCTTAGTGGAGGATGGAGTGAGTCGCTTTTCATCCCTTTCAGAGCCAGAAGAGGTGTTGTCTCCGTTCCGATCTAAGAATCCCAAACTTATCTTCAGAGCTAGACATCGCAAATCACAGGCAGCTGCAAACAAACTGGGGGTCCCTAATTGCATCAAATTCGCGGAGGCAGTGAAGGAGATGAGTAGTAAGTTGCGGAAGCGAAAACAAAAAGGTGGGGTTAGTCCGATGAAGAGGAAAGAAGATGGGGGCAATTTTGTGTCTCCGACGGAATTAATCTCTAATGCAGCAGTTTTGATCAGTAGTGATGTGAATCCAAACAGCTTGGAAGATAATGGTCGAAGTATAAAGCAAAGGGGAGGTACACCAACATCAGGTATCAACCTTCTATCTGGGAGTAATCTTTCTAGAGTTCCAGATTTTATGCCACCTGGCTTTGAAGACGAGAGAGAGAAGTTAGTGGAGGCAGCCAAGCTTCTCAATATTCAACTTGAAGTGGGGTTCAATTTTGAAGAAACTACCAATGAAACTTTGAAGTATTTAATTGACCAAGAACGGTGCGACCGAGCTAAGAAGATGGATTGGGAGCAAAGAGGTGACCAATGA 2151 0.4579 MRESKEREIGVLGGSARANGGKRNGFFHHLDKVTTSFFITNFPEESTTGDLWKLFLKYGRVVEVYIPKKLDKRGRRFGFVKFKEVEDVEELSERLRDVWIGSFKIWVNRSRFARSENKEELTQQTPASRPALPVGERRQGRSFKSALLENGVSTEVIKVPVNEELSKELRGSVVGSLARERNVKRIQTTLFMEGFPSISVTHMGDNKVLMRSPVEGDVERLMKSKNECLKYYFSEIKPWNPGLTAAQREVWVQIYGISVHIWGDDLFKLVGKRFGVFLDYDEETVRMKRLDVARIKILTTVWASIDVVLKVEVEGLFFDLWVVEERERKVPLVALNEEMEDEGSRVVPAEESVGGEEAYGEGALNSGEDDESGEEIDADVVIGEGHENENDGTKGSQKLNEEGKALTCTKSKEFVNTNMEIPYAPQAVAEKVDQVEQVLSLASSEEVGVRNEIGVCGSKLIEETKSILENVGTGGPHLVVGNLNDVAGYQGPISDPCDMGRGEPNGAELDRSFRGVLVEDGVSRFSSLSEPEEVLSPFRSKNPKLIFRARHRKSQAAANKLGVPNCIKFAEAVKEMSSKLRKRKQKGGVSPMKRKEDGGNFVSPTELISNAAVLISSDVNPNSLEDNGRSIKQRGGTPTSGINLLSGSNLSRVPDFMPPGFEDEREKLVEAAKLLNIQLEVGFNFEETTNETLKYLIDQERCDRAKKMDWEQRGDQ 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04351 716 Pfam Domain of unknown function (DUF4283) 164 297 IPR025558 -
Trre7g04351 716 CDD RRM_SF 38 105 - -
Trre7g04351 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Trre7g04351 716 MobiDBLite consensus disorder prediction 343 375 - -
Trre7g04351 716 MobiDBLite consensus disorder prediction 578 601 - -
Trre7g04351 716 SUPERFAMILY RNA-binding domain, RBD 24 111 IPR035979 GO:0003676
Trre7g04351 716 PANTHER DUF4283 DOMAIN PROTEIN 146 372 - -
Trre7g04351 716 SMART rrm1_1 36 108 IPR000504 GO:0003723
Trre7g04351 716 MobiDBLite consensus disorder prediction 117 138 - -
Trre7g04351 716 Gene3D - 34 114 IPR012677 -
Trre7g04351 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04351 Trre-Chr7 51384370 51386520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04351 35 158 Eukaryotic Initiation Factors Gene Family AT1G71770 28.226 1.34e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04351 - K12900 gmx:102663792 151.369