Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04348 ATGGCTGTTCCAAGTTCAGTTTTGAAGGTAGAAGAAATTCAAGGTAGAGGAAGAGGAATTGTTGCATCTCAACCTCTAAAAGCTGGTCAAATTATCCTCACAGATTCACCAATTCTTCTATACCCTGTTTCCCCTTTTTCCCCACATTCATCTTCCTTTTGTGACCATTGCTTTAAATCATTGCAGCATCAATCTTCAATTGTTTCGTGTCCTTCGTGTCACCAATATCGCTTTTGCAATTCAATTTGTCTCTCAAAAGCTCTCGGTTCTTCGCATTCAACATGGGTTTGTCAAGCATTATCTCAACTACAAACCAATCCTGTTCTCCTTCAACAACCACTCGAACGCCAACTACAAGCTCGTTTTCTTATTGCTGCTTACAATCTTGCTATTACCGCTCCGTCAAATTTTCAAATTTTGTTGTCTCTACAAGGTTCTGATGATAATGATGATGGAGCTCAGTTCCTACACTCCATTATTTCGTCCCTATTTTCGGGTTCATACCCGCGTAATGAGTTGTTTTCTTTGCAACTCACTTCTTCGCTTCTTGCTAAGGATAAGCTTAATGGTTTTGGTTTAATGCATCCTTTCTCTGAAAATGATGAGAATAGGTCTGTTAGAGCTTATGGCATTTACCCTTATGCATCCTTTTTTAATCATGATTGTCTTCCCAATGCGTGTAGATTTGATTATGTTGATGTTAATCCACCTTATCACGCCGATGGTCTTAATAATACTGATTTTGTTATAAGGATGATTCATGATGTTCCTCAAGGTAGGGAGATTTGTTTGAGTTATTTTCCTGTTAATGAAAACTATTCTAGTAGGCAGAAGAGATTGTTGGAAGACTATGGTTTTGCATGTAATTGTGATAGATGTAACGTTGAATCGAATTGGTCGGATAATGAGAGCGTTGAAGGAAATGTGGAGGAGGATGATGGACAAGAGGTTATGGTTATGGATGATGATGATGACGAGGAGGAGCAAAATGAAAATATGGAACCATCAGACAATGACAATAATGATTTCCCACATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGTTGGGGAACGTTAGCTCCTCTACCACCACAAGGTCATACATTATCTAATGTTATGGAATTTACAATGATGCTTTTGATAAATGCATTGTAG 1167 0.3762 MAVPSSVLKVEEIQGRGRGIVASQPLKAGQIILTDSPILLYPVSPFSPHSSSFCDHCFKSLQHQSSIVSCPSCHQYRFCNSICLSKALGSSHSTWVCQALSQLQTNPVLLQQPLERQLQARFLIAAYNLAITAPSNFQILLSLQGSDDNDDGAQFLHSIISSLFSGSYPRNELFSLQLTSSLLAKDKLNGFGLMHPFSENDENRSVRAYGIYPYASFFNHDCLPNACRFDYVDVNPPYHADGLNNTDFVIRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFACNCDRCNVESNWSDNESVEGNVEEDDGQEVMVMDDDDDEEEQNENMEPSDNDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGHTLSNVMEFTMMLLINAL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04348 388 Pfam SET domain 17 266 IPR001214 GO:0005515
Trre7g04348 388 CDD SET_SMYD 199 293 - -
Trre7g04348 388 ProSiteProfiles SET domain profile. 3 267 IPR001214 GO:0005515
Trre7g04348 388 Gene3D SET domain 19 293 IPR046341 -
Trre7g04348 388 Gene3D - 111 190 - -
Trre7g04348 388 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 379 IPR044238 -
Trre7g04348 388 SMART set_7 6 273 IPR001214 GO:0005515
Trre7g04348 388 SUPERFAMILY SET domain 4 288 IPR046341 -
Trre7g04348 388 Gene3D - 53 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04348 Trre-Chr7 51361384 51363684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g04348 SET 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04348 - - psat:127097585 586.26