Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04315 ATGGCATCATCACAGGTTGAAATTGCTTCTTTTAATTTATCACAAAATCAGAAAACTCAAAAAACAACATGGGTTTCAAGAGTTGCTAAGAACAACAACAACAACCTTGGAAACCTAAATTTCAACAAAAGATTTCATAATGTGTTTGGTGAGAAAGATGATTCTTCATTGTCTGCATTGGTTAGTCCACGACACTCGAAGATCGTTGATCGGTGGGCGGCAAGACAAGCTCAAGAAGTGGTGTCAAATCTTGGAAAAAATAATAATCAGGATGCTGTTAAGGTGTTTGATAAATTTCCTTCAAGATCGTCGAGTTTTAATTCTAGGAGAGGCAGAGAAGATTCTGTTTCGCCTCCTCGTTCTGATGGATCGTCTGAAAGCGAAAGAGCATCGAGCCTTGGTGCTTCTTCCCTTGTTCAGATTTGGGAAAAAAGGCTCAACCAATCCAATTGCACTAAACAAAATGTACCAATAGCCGGAAGAACTAATTCGGATTCGAGCTGTAATGACACTAATGCATGTTATTTGGATGATCATGGCAGGGTATCAGAAGAAGAGGAATCCTCCGATGAATCACTTATAGGCTGTGAATATGATAAAACAAGAGTTAATACTAATCAAAATTGTTTACCAAAAGTGAAGTGTAATTCAGATGCTGTTGAAAATGAGAAGAGCAAGGTTGCTGATATTATAAAGAGACTCTATGTTGACAATGATCAAGAGTTAAGTAATAGCGCGACAAATTCTCCATATAGAGAGCGTGATTGTGTTTCCACACCGAAACAATTAACGGAACATAAAAGTTTTTGTCAAGTCACAAGCCACCCGCGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAGTGTGATCGACATGGAGAGCTTAACAATCTTGCAGAACGAGGCGTGGTTTCTAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTACAACGTGGAGTAGCAGCTTTCGATCCATCTCTCCCGAAATCAACAGGACATGAAGGGAAAAAACAAAAACAAGGATCAACAGGAAATGAAGGGAATAAACAACAACAAGGATCAACAGGAAATGAAGGGAATAAACAACAACAAAGATCAACAGGACATGAAGGGAATAAACAACTGCAAGGATCAGTAATTATGCAACTAAGGGAAAGATTTGACACAAGAGATGAACCGAGAATTTCATCCCTGAAAGAAGTCGCTACTATCAATTGTAAGAAACATACACAAAATCATGTGTCTCAAACTAATGCAGGTGTAAAAGAAGAAGGGCATCTAAGTTGTGGTTTTGAAGCTCGAAGCGATGATCCAAAAGAAACTGTTGAGGAATCTTCATCAAAGGCTGATTCAAATGCAAATGAAATGGTTGATGAAGTAGAGGCAAGAGACCAAAAATCATATGATACTATTGAAACTGACTACAACGAGATATTAGAAGAGAAAGAGTGTAGTGACTATAATTATGATGAAACTAGTGCAAGTTATGACTGGATCAGTCCTATTTCTCGGCCTAAAAGCTATTGGGAAGAACTCAGACAAGAATGGTATAGAGAAATGCTAGACTTTGGTTCAGGCAATGATGAGAGACGCGAACTCCTTCAAAGAAAAACAGTTTCAACTGTCCTTTGTAGCGATTTTCGAGAGAAGATGGATAAATTGATGAAATCTCACGTGGGAACACAAACACACCTAGTCAATAATCAACACGACGAGGAAGATCAAGAAGAGAATATGGAAAAATTGATGGCATTTTATCGTGACCGCTTGCGCGTTAGAGGCAGTTCCGAAGAAGATGGAAAAGGTATAAACGAAAAAGAAGTGTCAGAGGAAGATGAATGCATCAATAGTGGTTCAGATCATGAACTTGGTGATTGTCATAGTGGTTCAGATCATGAACTTGGCGATTGTCATTCCTCATCATCGATACATACACCATCCTCAACAACATGGAGTTATAGAGACACCGACGGTGGGGATGATTCTGCTAGAGCTGCATTTGTATCTTCACCATTGCATTCACAATCTCAACCTTTCTATCAAGATAGTAGGCAATACTCTTCACCCGCCAACCCGTCCTCAATTGAAATGGAAATCATATACGATTTGCGAGGGCAAATGGAACTACTTTTTCAAGAGATGTCCGAGCTAAGGAAAACTCTAAAAACCTGTACAGACATGCAGATGCAAATGCAATTACAACAATCCCATAACCAAGAGGTTCACAAAGTTAAAGGAAAGAAATGCAGTAACAAGAAATCAAAGAAAGGAAATTGTTGTATTTGCAATGAAAATAAAGTAAACTCGGTTTTATACAGATGTGGTCACATGTGTGCATGTCTCAAATGTGCCAAGGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGTCAAGTTGAAATAATAGACGTTGTTAAAGTACATACTAACACATAA 2466 0.3844 MASSQVEIASFNLSQNQKTQKTTWVSRVAKNNNNNLGNLNFNKRFHNVFGEKDDSSLSALVSPRHSKIVDRWAARQAQEVVSNLGKNNNQDAVKVFDKFPSRSSSFNSRRGREDSVSPPRSDGSSESERASSLGASSLVQIWEKRLNQSNCTKQNVPIAGRTNSDSSCNDTNACYLDDHGRVSEEEESSDESLIGCEYDKTRVNTNQNCLPKVKCNSDAVENEKSKVADIIKRLYVDNDQELSNSATNSPYRERDCVSTPKQLTEHKSFCQVTSHPRIRGRQAFNDLIMQFECDRHGELNNLAERGVVSKFTQRGRIQSLLRLRLLQRGVAAFDPSLPKSTGHEGKKQKQGSTGNEGNKQQQGSTGNEGNKQQQRSTGHEGNKQLQGSVIMQLRERFDTRDEPRISSLKEVATINCKKHTQNHVSQTNAGVKEEGHLSCGFEARSDDPKETVEESSSKADSNANEMVDEVEARDQKSYDTIETDYNEILEEKECSDYNYDETSASYDWISPISRPKSYWEELRQEWYREMLDFGSGNDERRELLQRKTVSTVLCSDFREKMDKLMKSHVGTQTHLVNNQHDEEDQEENMEKLMAFYRDRLRVRGSSEEDGKGINEKEVSEEDECINSGSDHELGDCHSGSDHELGDCHSSSSIHTPSSTTWSYRDTDGGDDSARAAFVSSPLHSQSQPFYQDSRQYSSPANPSSIEMEIIYDLRGQMELLFQEMSELRKTLKTCTDMQMQMQLQQSHNQEVHKVKGKKCSNKKSKKGNCCICNENKVNSVLYRCGHMCACLKCAKELQWKSGKCPICQVEIIDVVKVHTNT 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04315 821 MobiDBLite consensus disorder prediction 604 667 - -
Trre7g04315 821 MobiDBLite consensus disorder prediction 649 666 - -
Trre7g04315 821 ProSiteProfiles Zinc finger RING-type profile. 769 808 IPR001841 -
Trre7g04315 821 MobiDBLite consensus disorder prediction 682 701 - -
Trre7g04315 821 SUPERFAMILY RING/U-box 768 814 - -
Trre7g04315 821 MobiDBLite consensus disorder prediction 604 648 - -
Trre7g04315 821 MobiDBLite consensus disorder prediction 334 388 - -
Trre7g04315 821 MobiDBLite consensus disorder prediction 351 388 - -
Trre7g04315 821 Pfam Zinc finger, C3HC4 type (RING finger) 766 813 - -
Trre7g04315 821 PANTHER BNAC05G24000D PROTEIN 450 820 - -
Trre7g04315 821 CDD mRING-HC-C3HC5_NEU1 768 817 - -
Trre7g04315 821 MobiDBLite consensus disorder prediction 442 473 - -
Trre7g04315 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 743 819 IPR013083 -
Trre7g04315 821 MobiDBLite consensus disorder prediction 102 132 - -
Trre7g04315 821 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04315 Trre-Chr7 51109704 51113045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04315 769 821 C3H Transcription Factor Family AT3G06140 37.736 8.43e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04315 - - mtr:25493454 969.148