Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04299 ATGCCAATGAGTTCAGGTTCAGGAGACAAGCAAGATATGCATGATCAAACTGGTTGCTTTGATCCCAACACAATGGATGAAGGTGTTGAAAACTCTCAGAAAGATTACAACACAAACCACAATAATATTAACCTTGAAGAGAGTTTCAAGCCTTCTGTGGAGGAACTCTCTTATCACAATCATCAACACCTTGAAGATGTTTCCACTTATACAAATGGTTTCACTCCTTCATCAGTAGACATTGAACAGCAAAATCTTGGTTTGAACATTGGGAGCTCCTTCAACAACAGCAACAACAACGATATGGATAATCATTTGGCGCACGAGGTGTATCAGAACTCGACTTGGGACCCTAGTGTTCAGGATATGGACTATATCAATCACCAAGAACACCACCAACTATCTGAACAACAATATCAACAATTTGTTGAGACACAAAACCATAACCAAAGCTACAATCCCTCTAGCATACTAGACCCTTCTTACTCTTCACCAGATCTCCTTAACCTTCTCCGTTTACCTAGATGTTCAGCTTCATCTATGCTCACAACTCCATCCAACATTTGCTTGACAAACCCAACTCAAAAAGCACCTAATTTTCATAACTCAATGAGTTTTCTTGGAGACCTTCCAATAGGATCATCAGATAATACAAGTGGATCATCGGTTTTATATGATCCTCTATTTCCTTTGAACCTTCCTCCACAGCCACCAGCTCTTAGGGAATTGTTTCAATCTCTCCCTCACGGCTATAGCATGCCGACAAGTTCAAGGAATGGTTCTCTTTTCGGTGGAGGGGATGAGATGGAGGGAGATGGAGACATGGGAGTGCTGGAATTCAATAGGGCCACTGCTTCTGTTGGCAAAGGAAGGGGAGGAAAAGCTACAAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAGTTGAATGGAAAGTACAAAATCTTGAGGAGTCTCATCCCAAATCCCACCAAGGTTGATAGAGCATCAGTGGTTGGAGATGCTATTGAGTATATAAGAGAACTGATTAGAACTGTGAATGAGCTGAAATTATTGGTGGAGAAGAAAAGACATGGGAGGGACATGTGTAAGAGACTTAAAACTGAAGATGATGCTGCTGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGAAGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATCGACGATGATGTTACAATCAAACTGTTTCAGAGGAAGAAGGTTAATTGTCTGCTGTTTGTATCCAAGGTTCTTGATGAACTTCAGCTAGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGTAAGGTAACTGAAGGTTCATCAGTTTATGCAAGTGCTATAGCCAACAGGGTGATTGATGTTCTTGACACTCAATATGCAGCAGGTGTTCCACATACAAGTAGGCTGTAG 1476 0.414 MPMSSGSGDKQDMHDQTGCFDPNTMDEGVENSQKDYNTNHNNINLEESFKPSVEELSYHNHQHLEDVSTYTNGFTPSSVDIEQQNLGLNIGSSFNNSNNNDMDNHLAHEVYQNSTWDPSVQDMDYINHQEHHQLSEQQYQQFVETQNHNQSYNPSSILDPSYSSPDLLNLLRLPRCSASSMLTTPSNICLTNPTQKAPNFHNSMSFLGDLPIGSSDNTSGSSVLYDPLFPLNLPPQPPALRELFQSLPHGYSMPTSSRNGSLFGGGDEMEGDGDMGVLEFNRATASVGKGRGGKATKHFATEKQRREQLNGKYKILRSLIPNPTKVDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGRDMCKRLKTEDDAAESCNIKPFGDPDGSIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKVNCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKVTEGSSVYASAIANRVIDVLDTQYAAGVPHTSRL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04299 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Trre7g04299 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 362 IPR036638 GO:0046983
Trre7g04299 491 CDD bHLH_AtMYC1_like 298 362 IPR045896 -
Trre7g04299 491 PANTHER TRANSCRIPTION FACTOR BHLH91 13 483 IPR045895 GO:0006355|GO:0048658
Trre7g04299 491 SMART finulus 299 348 IPR011598 GO:0046983
Trre7g04299 491 Gene3D - 291 368 IPR036638 GO:0046983
Trre7g04299 491 Pfam Helix-loop-helix DNA-binding domain 296 342 IPR011598 GO:0046983
Trre7g04299 491 MobiDBLite consensus disorder prediction 26 40 - -
Trre7g04299 491 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04299 Trre-Chr7 50915351 50917216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04299 13 488 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.935 5.89e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g04299 HLH 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04299 - - gmx:100782512 680.633