Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04286 ATGGCTGAAAATAATTCTCATTCTCAATCTCCAATACCATGTAATAATCATGAACAAGTAGCTGGTTTTGATTGGATGGTTCTAGTAGCAGCTATTCTATGTGCCATTATTTGTGCTCTTGGTCTTAACACAATGTTACAATGTGCTTTTCAATGTATTGGTCGTGTAGTAACTGAACCTATGCAATGGATTGCTACTTGGAGGTTAAATTCAGGAATCAAGAAAAAAGAAATGGTAGCTTTGCCAACTTCAACTTATTGTGATGATTTAGGTTCTCCATCTTCAGCTTCTAGTTGTGTTATTTGTTTGGCTGAATTTTGTAATGGAGATCAGATAAGGTTTCTACCAAAATGCAATCATCATTTTCATGTTGTTTGTATTGATAAGTGGTTGTTGTCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAG 441 0.3537 MAENNSHSQSPIPCNNHEQVAGFDWMVLVAAILCAIICALGLNTMLQCAFQCIGRVVTEPMQWIATWRLNSGIKKKEMVALPTSTYCDDLGSPSSASSCVICLAEFCNGDQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRHLTQV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04286 146 PANTHER RING-H2 FINGER PROTEIN ATL78 13 143 IPR044602 GO:0016567|GO:0016740
Trre7g04286 146 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Trre7g04286 146 SMART ring_2 99 140 IPR001841 -
Trre7g04286 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 145 IPR013083 -
Trre7g04286 146 Pfam Ring finger domain 98 141 IPR001841 -
Trre7g04286 146 SUPERFAMILY RING/U-box 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04286 Trre-Chr7 50803020 50803460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04286 9 142 C3H Transcription Factor Family AT3G10910 39.333 3.32e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04286 - K19040 tpra:123918739 274.248