Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04238 ATGGCCGATGATGAACCAATGCCTACTCGCTGGTCTTTTCAGGAGTTCAAAATGTATTATGATGTTAGGCTTGGTAGGAAGAAATTGGTGGAGAAGAATGGTGAGACCGCTGATAATGCCGTCAGCAATGGAAATTCTTCTGGCATTGCATCAAATGGTAATTTTCATGGTAAAAAAACGTCGGATAAAGCTATTTATGAGCAGTTCCAAAGCCAGGGGCAGAATCTGACGCACACAAATGGTTTTGCATCAAACAATGTTGATGAAACACCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAAATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAGGAAGCTGTAGTGATGCCGATTAAGTATCCTAAGTACTTTAAGGGTCTGTTATCACCGTGGAAGGGCATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAACACTACATTTTTTAATATTTCAGCATCGTCTGTTGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAATAAAGGTGTTATTTGAGCTTGCAAGGCATCATGCACCTGCAACAATATTTCTGGATGAAATTGATGCAATCATCAGTCAACGTGGTGAGGCACGCAGTGAACACGAAGCAAGCAGACGGTTAAAAACTGAACTACTCATTCAGATGGATGGTTTAACGCGGACAGAAGAACTTGTTTTTGTTTTGGCGGCGACAAATCTTCCCTGGGAATTGGATGCTGCCATGCTTAGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCAAGAAGAGCAATGTTTGAGGAACTTCTTCCTCCGCAGACTGATGAGGAACCGATCCCCTATGATTTACTTGTGGATCGGACAGAAGGATATTCAGGCTCGGATCTCCGCCTACTTTGTAAAGAAACTGCAATGCAGCCATTGAGACGCTTAATGTTACAACTCGAACAGGAACAAGATGTGGTGCCTGAAGAAGAGCTGCCAAAAGTTGGGCCAGTCAGGCCTGAAGACGTAGAGACAGCTTTAAGGAACACACGGCCATCTGCTCATCTCCATGCCCACAAATACAACAAGTTTAATTCTGATTATGGTAGTCAAATACTTCAATGA 1218 0.4392 MADDEPMPTRWSFQEFKMYYDVRLGRKKLVEKNGETADNAVSNGNSSGIASNGNFHGKKTSDKAIYEQFQSQGQNLTHTNGFASNNVDETPQKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFKGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPATIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELLPPQTDEEPIPYDLLVDRTEGYSGSDLRLLCKETAMQPLRRLMLQLEQEQDVVPEEELPKVGPVRPEDVETALRNTRPSAHLHAHKYNKFNSDYGSQILQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04238 405 PANTHER AAA DOMAIN-CONTAINING 60 401 - -
Trre7g04238 405 SMART AAA_5 157 294 IPR003593 GO:0016887
Trre7g04238 405 FunFam Katanin p60 ATPase-containing subunit A-like 2 120 304 - -
Trre7g04238 405 FunFam Katanin p60 ATPase-containing subunit A-like 2 293 381 - -
Trre7g04238 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 387 IPR027417 -
Trre7g04238 405 Pfam ATPase family associated with various cellular activities (AAA) 161 291 IPR003959 GO:0005524|GO:0016887
Trre7g04238 405 CDD RecA-like_VPS4-like 127 290 - -
Trre7g04238 405 Gene3D - 293 381 - -
Trre7g04238 405 Gene3D - 120 395 IPR027417 -
Trre7g04238 405 Pfam AAA+ lid domain 318 354 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04238 Trre-Chr7 50379266 50385908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04238 155 364 Calmodulin-binding Proteins AT3G56690 36.620 1.46e-31 125