Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04221 ATGACTTTAGCTACTCTTTACTATGTAACCTATGTTGCACCAGGAGCCATACCAAAGACAGTTTCCAACCTTTCTTCTCTTGAAGAAATCTACTTACAAAATAACTCCTTATCAGGAGAAATTCCAAAAGGAATCAGTGATCTTGCACAGTTGAGAATAGTGAACCTTCAATATAATATGCTCAAAGGCAACATACTTAAGTTCAACAACTCATTATTGCAATACTTGGAACTTGGTGATAATAATTTGACTGGCATTCTTCCATCAAATGTTTGTCAAGGGCTTCCAAACCTTAGATCACTCTTACTTTACTTTAATGATTTCTCTGGTGAGATGCCAAAAGTTTGGCGTTATTGCAAAGAGTTGCAAGTTTTAGGGCTATCCCACAATAACTTTGACAAAGGACATATGCCATCTGACATTGGAAAATTGACCAAGCTTCAATATTTGTATCTTGCTTCGACCAACTTGTATGGTGAAATTCCATTTTCCCTCTTCAACATCTCTTCTTTGATTGTTATCAACCTTAACAAAAACAACTTAAATGGAATTCTTCCACATGAGATGTGTCATCAATTTCCTCAACTTCAAATGTTTACTTTGCACACTAATGATTACAGTGGAATCATCCCACGATCAATTGGAAACTGCACATCTTTACAATATTTCAGTTTAGCTGATAACTTTTTTGAAGGTTCAATACCAATGGAGATTGGCCATCTCAATCAACTCCAAGTTCTGCAACTGTCAAATAACAGCTTGAGTGGACCTATTCCTTCAAAACTCTTCAACATTTCAACATTGGAAGTTTTGATTCTACAAATAAATTTTTTCTCAGGCATGCTTCCATCAAACATGGGATTTGGTCTTCCTAACCTACAACGCCTACAAATATATGAAAACAACTTTGTTGGAAAATTTCCAGACAGTATATCAAATGCTTCAAATCTCGCCGTACTTGACATGAGTGATAATGAATTTACTGGAGTTATGTCCAATTCTTTTGGTGATTTAACACTCATCGAATTCCTCGGCATAGGTGGTAATAATTTGACATTAAATGATGATTCTCTTGAAATAAACTTCCTTACTTCACTTACTAGTTGCACATATCTTACATATCTTGATGTGTCAGAAAATATGTTATCAAAACTTCCCAAGTCCATTGGAAACTTATCATTAGAAAATTTTCTGGCAGATTCTTGTGGAATTAATGGAAATATTCCGCTAGAAATCGGAAACATGAGCAACCTCATTCAATTATCTCTAGGTATGAATGGTTTAAATGGACCAATACCTAGTACAATTAAAGGGTTACATAATCTTCAATCTTTGAATCTTGAATACAATAGACTGCAAGGATCTATAATTCATGAGCTTTGTGAAGTTAGCAGTTTGAGTGAGTTGTCTTTAACAAGCAATAAGCTCTTTGGTGTGTTACCAACATGTTTGGGAAAAATGACTTCTCTTAGAAAGTTTCACATAGGATCAAATAAGTTTACTTCAATGATACCTTTCTCTTTTTGGAATCTTGAAGATATTTTAGAGGTAAACTTATCCTCTAATGCTTTAATTGGAAATCTTCCACTTGAGATTAAGAATTTAAGAGCTCTAGTACTATTAGATCTTTCAAATAATCAAATTTCAAGCAACATTCCAACAGCTATAAGTTTATTGAGAACTTTAGAAACTCTCTCCTTAGCAGATAATAAATTGAATGGCCTTATTCCAACATCACTTGGTGAAATGTTAAGTTTGAGTTTCTTGGACTTGTCTCAAAATCTTATATCTGGTGTGATTCCAAAGTCATTAGAGTCACTTTCTTCTCTTAAGTATATGAATCTATCATACAATAGATTGCAAGGAGAGATTCCTAATGGAGGACCTTTCAAAAGATTCACAGCTCGATCTTTCATGCATAATGACGCGCTTTGTGGCAGTCCTCGCTTACGAGTACCTCCATGTGTTAAAAAAATTAGAAAAAAATCAAAGACAAAGATGATATTAATAATTTTCATATCATCCATAATTTTTGTCTTAGGCATTTTGGTTGTTGCATGCATAATACTTCAGAGGCAAAAAAGGAAGAAGGTTGAAAATCCACCTAAAAGTGATTTGTCAACTAATTTAGGTGTTCCAAGAAGAATTTCTTACTATGAACTTGTGAAAGCAACTAATGGATTCAATGAAAGTAATTTACTTGGAAAAGGTGGCTTTGGAACTGTGTATCAAGGAATTCTTTCTAGTGGGAAGATGGTAGCAATTAAAGTACTTGACTCGACATTGGAAGCAACATCAAGAAGCTTTGATGCAGAATGTAATGCAATACGCAACCTTCGACATCGAAATCTTGTTCAAGTTATCAGTAGTTGTTCAAATGATGATTTCAAATCTTTAGTGATGGAGTTTATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAGAGAACTATTGTTTGGATTTCTTACAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTACATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTACTAGATGAAGATATGGTTGCACATGTTAGTGATTTTGGCATTTCTAAGCTCTTGGATGAAGGACAATCAAAAACTCATACACAAACTTTAGCTACTATTGGTTATGTTGCACCAGAGTATGGATCTAAAGGAGTCATTTCAGTTAAAGGAGATGTGTACAGTTATGGGATAATGCTAATGGAGATGTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATTAGTAAATCAATGGTCAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGAGAAAGAACTTCATGAAATTTTAGCTTTAGCTTTGAGTTGTTGTACAGATTCACCTGAAGCAAGAATTAAAATGACGGATGTAACTGCATCGTTAATCAAAATCAAGACCTTATTCTTGCGATCAAAAAGGAAATAA 3021 0.3403 MTLATLYYVTYVAPGAIPKTVSNLSSLEEIYLQNNSLSGEIPKGISDLAQLRIVNLQYNMLKGNILKFNNSLLQYLELGDNNLTGILPSNVCQGLPNLRSLLLYFNDFSGEMPKVWRYCKELQVLGLSHNNFDKGHMPSDIGKLTKLQYLYLASTNLYGEIPFSLFNISSLIVINLNKNNLNGILPHEMCHQFPQLQMFTLHTNDYSGIIPRSIGNCTSLQYFSLADNFFEGSIPMEIGHLNQLQVLQLSNNSLSGPIPSKLFNISTLEVLILQINFFSGMLPSNMGFGLPNLQRLQIYENNFVGKFPDSISNASNLAVLDMSDNEFTGVMSNSFGDLTLIEFLGIGGNNLTLNDDSLEINFLTSLTSCTYLTYLDVSENMLSKLPKSIGNLSLENFLADSCGINGNIPLEIGNMSNLIQLSLGMNGLNGPIPSTIKGLHNLQSLNLEYNRLQGSIIHELCEVSSLSELSLTSNKLFGVLPTCLGKMTSLRKFHIGSNKFTSMIPFSFWNLEDILEVNLSSNALIGNLPLEIKNLRALVLLDLSNNQISSNIPTAISLLRTLETLSLADNKLNGLIPTSLGEMLSLSFLDLSQNLISGVIPKSLESLSSLKYMNLSYNRLQGEIPNGGPFKRFTARSFMHNDALCGSPRLRVPPCVKKIRKKSKTKMILIIFISSIIFVLGILVVACIILQRQKRKKVENPPKSDLSTNLGVPRRISYYELVKATNGFNESNLLGKGGFGTVYQGILSSGKMVAIKVLDSTLEATSRSFDAECNAIRNLRHRNLVQVISSCSNDDFKSLVMEFMSNGSVEKWLYSENYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGQSKTHTQTLATIGYVAPEYGSKGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELTLKTWISKSMVNSVMEVVDYNLVSQHEKELHEILALALSCCTDSPEARIKMTDVTASLIKIKTLFLRSKRK 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04221 1006 Gene3D Phosphorylase Kinase; domain 1 711 803 - -
Trre7g04221 1006 SUPERFAMILY L domain-like 15 392 - -
Trre7g04221 1006 SMART LRR_sd22_2 24 50 - -
Trre7g04221 1006 SMART LRR_sd22_2 535 554 - -
Trre7g04221 1006 SMART LRR_sd22_2 415 441 - -
Trre7g04221 1006 SMART LRR_sd22_2 241 267 - -
Trre7g04221 1006 SMART LRR_sd22_2 369 394 - -
Trre7g04221 1006 SMART LRR_sd22_2 583 609 - -
Trre7g04221 1006 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 365 659 - -
Trre7g04221 1006 Gene3D Ribonuclease Inhibitor 355 664 IPR032675 -
Trre7g04221 1006 PANTHER OS04G0122200 PROTEIN 239 999 - -
Trre7g04221 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Trre7g04221 1006 ProSiteProfiles Protein kinase domain profile. 728 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04221 1006 ProSiteProfiles Leucine-rich repeat profile. 537 559 IPR001611 GO:0005515
Trre7g04221 1006 Gene3D Transferase(Phosphotransferase) domain 1 804 1003 - -
Trre7g04221 1006 SUPERFAMILY L domain-like 400 648 - -
Trre7g04221 1006 Gene3D Ribonuclease Inhibitor 13 92 IPR032675 -
Trre7g04221 1006 Gene3D Ribonuclease Inhibitor 93 189 IPR032675 -
Trre7g04221 1006 Gene3D Ribonuclease Inhibitor 190 288 IPR032675 -
Trre7g04221 1006 SMART serkin_6 728 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04221 1006 SMART LRR_typ_2 487 510 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 144 168 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 315 337 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 241 265 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 607 631 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 95 118 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 535 558 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 439 464 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 24 48 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 366 392 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 559 582 IPR003591 -
Trre7g04221 1006 SMART LRR_typ_2 583 606 IPR003591 -
Trre7g04221 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 88 185 - -
Trre7g04221 1006 Pfam Protein kinase domain 729 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04221 1006 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515
Trre7g04221 1006 Pfam Leucine rich repeat 291 351 IPR001611 GO:0005515
Trre7g04221 1006 Pfam Leucine rich repeat 560 620 IPR001611 GO:0005515
Trre7g04221 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 282 - -
Trre7g04221 1006 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524
Trre7g04221 1006 Gene3D Ribonuclease Inhibitor 289 354 IPR032675 -
Trre7g04221 1006 FunFam Serine-threonine protein kinase plant-type 708 803 - -
Trre7g04221 1006 SUPERFAMILY Protein kinase-like (PK-like) 704 993 IPR011009 -
Trre7g04221 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 804 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04221 Trre-Chr7 50244768 50252318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04221 404 644 Receptor kinase-like Gene Family AT3G47570 32.510 1.48e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre7g04221 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04221 - K13420 mtr:25485995 1127.46