Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04217 ATGCAGACTCACGATTATTTTCATCCGGGAAAGGCGGTACTTCCTTTGGCAGATGAAGCCATTGGTACTTTTATGAATGGTCCGCACGCTTCTGCATTTAATGCAGCTTTACCTCCGGGTGTGAGGCAGATGCCACCCTTTGAAAGGTATAACTTGCAGCCCTCTGAGGTTTGCCCTAAGAATTTCATTGTCTTTGATCAAACGGATCAACAGAACCGGATTTTGTTCCATCCTGCGACAACCTACAAGTTTAACAGTCCTGGCTTCAACACTCATGCTACTTATACTCAAGATTTTGAAAAGGATAAAATTAATCAAATGGAAAGGGAACTGTCATCTTCTTTTGAAGAGGACTCTAAGGACATTGATGCGTTGATGAGCCTAGATTCGGATGAACTAGAAAACTATGACGACGAAGAAGTCAGCACTGCAAGGACTCATGAAAAAGATGACAGTACATCTGATACTTGCTCCAGTTATTGCACAAAATCAAGGAAGAAAAAGAGGTTATCATCTGTACAAAACTCTTCTGGGTCAAAGGCTTACTGTAACAGTGAAAAGAAACAACACCTAGAGATGAAGAGGATGGTGAAAATGTTGAGAAATATCGTGCCCGGTGGAGGCAACCAAATGGATACTGTTACCGTTTTGGACGAAGCTGTAAAATACCTCAAGACTCTCAAGGTTGAAGTGGAGCAATTCGGAATTGGACCATGA 717 0.4198 MQTHDYFHPGKAVLPLADEAIGTFMNGPHASAFNAALPPGVRQMPPFERYNLQPSEVCPKNFIVFDQTDQQNRILFHPATTYKFNSPGFNTHATYTQDFEKDKINQMERELSSSFEEDSKDIDALMSLDSDELENYDDEEVSTARTHEKDDSTSDTCSSYCTKSRKKKRLSSVQNSSGSKAYCNSEKKQHLEMKRMVKMLRNIVPGGGNQMDTVTVLDEAVKYLKTLKVEVEQFGIGP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04217 238 MobiDBLite consensus disorder prediction 168 187 - -
Trre7g04217 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 233 IPR036638 GO:0046983
Trre7g04217 238 Gene3D - 177 234 IPR036638 GO:0046983
Trre7g04217 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Trre7g04217 238 MobiDBLite consensus disorder prediction 127 158 - -
Trre7g04217 238 PANTHER TRANSCRIPTION FACTOR BHLH145 30 236 IPR037546 -
Trre7g04217 238 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04217 Trre-Chr7 50214588 50215304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04217 16 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 39.583 3.80e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04217 - - mtr:11405720 404.831