Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04214 ATGGTCCCTAACAGGACATCAAAAGGAAAACAAAAGCTAGAGATGAAGAAGATTGAGAAAAAGGATAATCTTTATGCATCATTTTCAAAAAGGAAGTTGAACATTTACAAAAAGGGTTCAGAGTTATCAACACTTTGTGGAGCTTCTGTTGATATTCTTATGTTTTCTCCAACTGGAAAACCCTATTGTTATGGAAATCCTTCTTCTGAATCCATAACAAGAACTAGTTTGGGTAATGATAAAAAGTACTCTTCTATAGAAGAGTTATCAAATAGATTAATGATTGGAGAATATAATGCAAGAAATGATAATTTGGTTGATAAAATTAATGTAGCAAATGCTCACCATGAAAATTTGAAGAAGTTGACAAGTTCTACTAGCTGGTGGTCGATCAATGAGGAAAATGTTGGTGACTACAATTATGATGAATTAATAAGAATGGAAAAAAATTTGGTGGATTTTGCCAATTTAATGATAAATGATGTTTTAAGCTATGGAGGAGATATTAATGATCATGCTAAGCCTACCATAAACAAATTGAATGGAGTCAATTCAAGTCCTACTTATATCTTTCCTCTCAATGAAGCCAACCATGATGGTGCAAGTGGAAGTGGTATAAAAAATCTATACCAAGAAGATAATGTGAATTCTGGTGGAAGTGGTAGTCAAGCTCAAGCTCTTCCAAATAATGATGAGAATGACAATTAA 708 0.3249 MVPNRTSKGKQKLEMKKIEKKDNLYASFSKRKLNIYKKGSELSTLCGASVDILMFSPTGKPYCYGNPSSESITRTSLGNDKKYSSIEELSNRLMIGEYNARNDNLVDKINVANAHHENLKKLTSSTSWWSINEENVGDYNYDELIRMEKNLVDFANLMINDVLSYGGDINDHAKPTINKLNGVNSSPTYIFPLNEANHDGASGSGIKNLYQEDNVNSGGSGSQAQALPNNDENDN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04214 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Trre7g04214 235 SUPERFAMILY SRF-like 9 74 IPR036879 GO:0003677|GO:0046983
Trre7g04214 235 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Trre7g04214 235 MobiDBLite consensus disorder prediction 207 235 - -
Trre7g04214 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Trre7g04214 235 MobiDBLite consensus disorder prediction 202 235 - -
Trre7g04214 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Trre7g04214 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 152 - -
Trre7g04214 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trre7g04214 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Trre7g04214 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04214 Trre-Chr7 50197425 50198249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04214 1 139 Type I MADS-box Gene Family AT1G28460 34.641 6.84e-20 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g04214 SRF-TF 9.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04214 - K12412 jre:109019868 102.064