Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04208 ATGGTCCCTAAGAGGACATCAAAAGGAAAACAAAAGCTAGAGATGAAGAAGATTGAGAAAAAGGATAATCTTTATGCACCATTTTCAAAAAGGAAGTTGAACATTTACAAAAAGTGTTCAGAGTTATCAACACTTTGTGGAGCTTCTGTTGATATTCTTATGTTTTCTCCAACTGGAAAACCCTATTGTTATGGAAATCCTTCTTCTGAATCCATAACAACAACTAGTTTGGGTAATGATAAAAAGTACTCTTCTATAGAAGAGTTATCAAATAGATTAATGATTGGAGAATATAATGCAAGAAATGATAATTTGGTTGATAAAATTAATGTAGCAAATGCTCACCATGAAAATTTGAAGAAGTTGACAAGTTCTACTAGCTGGTGGTCGATCAATGAGGAAAATGTTGGTGACTACAATTATGATGAATTAATAAGAATGGAAAAAAATTTGGTGGATTTTACCAATTTAATGATAAATGATGTTTTAAGCTATGGAGGAGATATTAATGATCATGCTAAGCCTACCATAAACAAATTGAATGGAGTCAATTCAAGTCCTACTTATGTCTTTCCTCTCAATGAAGCCAACCATGATGGTGCAAGTGGAAGTGGCATAAAAAATCTATACCAAGAAGATAATGTGAATTCTGGTGGAAGTGGTAGTCAAGCTCAAGCTCTTCCAAATAATGATGAGAATGACAATTAA 708 0.3263 MVPKRTSKGKQKLEMKKIEKKDNLYAPFSKRKLNIYKKCSELSTLCGASVDILMFSPTGKPYCYGNPSSESITTTSLGNDKKYSSIEELSNRLMIGEYNARNDNLVDKINVANAHHENLKKLTSSTSWWSINEENVGDYNYDELIRMEKNLVDFTNLMINDVLSYGGDINDHAKPTINKLNGVNSSPTYVFPLNEANHDGASGSGIKNLYQEDNVNSGGSGSQAQALPNNDENDN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04208 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Trre7g04208 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Trre7g04208 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Trre7g04208 235 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Trre7g04208 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Trre7g04208 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Trre7g04208 235 MobiDBLite consensus disorder prediction 207 235 - -
Trre7g04208 235 MobiDBLite consensus disorder prediction 202 235 - -
Trre7g04208 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Trre7g04208 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 152 - -
Trre7g04208 235 SUPERFAMILY SRF-like 9 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04208 Trre-Chr7 50177566 50178390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04208 1 139 Type I MADS-box Gene Family AT1G28460 35.294 2.19e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g04208 SRF-TF 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04208 - K12412 jre:109019868 101.679