LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g04208	ATGGTCCCTAAGAGGACATCAAAAGGAAAACAAAAGCTAGAGATGAAGAAGATTGAGAAAAAGGATAATCTTTATGCACCATTTTCAAAAAGGAAGTTGAACATTTACAAAAAGTGTTCAGAGTTATCAACACTTTGTGGAGCTTCTGTTGATATTCTTATGTTTTCTCCAACTGGAAAACCCTATTGTTATGGAAATCCTTCTTCTGAATCCATAACAACAACTAGTTTGGGTAATGATAAAAAGTACTCTTCTATAGAAGAGTTATCAAATAGATTAATGATTGGAGAATATAATGCAAGAAATGATAATTTGGTTGATAAAATTAATGTAGCAAATGCTCACCATGAAAATTTGAAGAAGTTGACAAGTTCTACTAGCTGGTGGTCGATCAATGAGGAAAATGTTGGTGACTACAATTATGATGAATTAATAAGAATGGAAAAAAATTTGGTGGATTTTACCAATTTAATGATAAATGATGTTTTAAGCTATGGAGGAGATATTAATGATCATGCTAAGCCTACCATAAACAAATTGAATGGAGTCAATTCAAGTCCTACTTATGTCTTTCCTCTCAATGAAGCCAACCATGATGGTGCAAGTGGAAGTGGCATAAAAAATCTATACCAAGAAGATAATGTGAATTCTGGTGGAAGTGGTAGTCAAGCTCAAGCTCTTCCAAATAATGATGAGAATGACAATTAA	708	0.3263	MVPKRTSKGKQKLEMKKIEKKDNLYAPFSKRKLNIYKKCSELSTLCGASVDILMFSPTGKPYCYGNPSSESITTTSLGNDKKYSSIEELSNRLMIGEYNARNDNLVDKINVANAHHENLKKLTSSTSWWSINEENVGDYNYDELIRMEKNLVDFTNLMINDVLSYGGDINDHAKPTINKLNGVNSSPTYVFPLNEANHDGASGSGIKNLYQEDNVNSGGSGSQAQALPNNDENDN	235

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g04208	235	PRINTS	MADS domain signature	30	45	IPR002100	GO:0003677\|GO:0046983
	Trre7g04208	235	PRINTS	MADS domain signature	45	66	IPR002100	GO:0003677\|GO:0046983
	Trre7g04208	235	PRINTS	MADS domain signature	10	30	IPR002100	GO:0003677\|GO:0046983
	Trre7g04208	235	Gene3D	-	21	90	IPR036879	GO:0003677\|GO:0046983
	Trre7g04208	235	ProSiteProfiles	MADS-box domain profile.	8	68	IPR002100	GO:0003677\|GO:0046983
	Trre7g04208	235	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	17	64	IPR002100	GO:0003677\|GO:0046983
	Trre7g04208	235	MobiDBLite	consensus disorder prediction	207	235	-	-
	Trre7g04208	235	MobiDBLite	consensus disorder prediction	202	235	-	-
	Trre7g04208	235	SMART	madsneu2	8	67	IPR002100	GO:0003677\|GO:0046983
	Trre7g04208	235	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	11	152	-	-
	Trre7g04208	235	SUPERFAMILY	SRF-like	9	74	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g04208	Trre-Chr7	50177566	50178390	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g04208	1	139	Type I MADS-box Gene Family	AT1G28460	35.294	2.19e-20	83.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Trre7g04208		SRF-TF	1.8e-16	No_clan