Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04203 ATGGCGAAAAAGGCTAAAGCTCCAGCCTCCACCTCCACTTCCTCCTGTAAACTAGTGTTGGGGATTAAATCAAATGAGGGAATGAAGAGATCGGTGCGGCAGACTAAGTCAAGAGAGATGACCAAAGCTAAACAGAAAAAGATCAAACAAAAGATTGATGCTAAGAAGCCAAAGAAACCACCCACTGCTTTCTTCTACTTCTTGAAGGATTTTCGGAAGGAGTTTCAAGACCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGATAAATGGAAAACAATGACTTATGAGGAGAAGGTTCAGTACTATGATATAGCAACAGAAAAACGTGCAGAATTCGATAGAGCAACGACAGAGTATAACAAGAAAATGGAAAACGGCGATTTTGAAGAAACTGACGAGGAGTCAGTATGA 429 0.4103 MAKKAKAPASTSTSSCKLVLGIKSNEGMKRSVRQTKSREMTKAKQKKIKQKIDAKKPKKPPTAFFYFLKDFRKEFQDQNPDVKSMRDIGKACGDKWKTMTYEEKVQYYDIATEKRAEFDRATTEYNKKMENGDFEETDEESV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04203 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 57 126 IPR009071 -
Trre7g04203 142 MobiDBLite consensus disorder prediction 27 58 - -
Trre7g04203 142 Gene3D High mobility group box domain 37 141 IPR036910 -
Trre7g04203 142 CDD HMG-box_AtHMGB1-like 58 118 - -
Trre7g04203 142 Pfam HMG (high mobility group) box 57 126 IPR009071 -
Trre7g04203 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 30 140 IPR031061 -
Trre7g04203 142 SUPERFAMILY HMG-box 49 131 IPR036910 -
Trre7g04203 142 SMART hmgende2 56 127 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04203 Trre-Chr7 50137640 50143734 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre7g04203 HMG_box 5.3e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04203 - - mtr:25493401 212.231