Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04197 ATGTTATCTCTAAACCTTAAATTGACCATAGTCATACTCATTTCAATTCTATCCATTATTGTTTCACATGCTCAAACAAAAGCAAAAACAACAATTGAAGTTGAAATTGAAGCACTAAAAGAATTCAAAAAATCCATAACAAATGATCCAAACAAAATCCTTGCAAATTGGATTGACACAAAACCTCATTGTAATTGGTCAGGAATTGAATGTAACAACCAAACATCAAAACATGTTATATCAATTTCACTTTTTGAACTTCAACTTGAAGGTGAAATTTCACCATTTATTGGTAACATTTCATCTCTTCAACTTCTTGATTTAACTTCAAATTCATTCACTGGTCAAATTCCACCACAAATTAGTCAATGCACTCAACTCACATCACTTTATCTTACTGATAATTCTCTCTCAGGTTCAATTCCTCATGAATTAGGTAACCTAAAAAATTTGCAATTTTTGGATTTAAGTAGTAACCATTTCAATGGAACTTTACCTAATAGTATATTCAATGTTACTTCTTTGTTAGGTTTTGCTTTCAATTTCAATAATCTTAGTGGCACAATCCCTTCAAATGTAGGAAATTTAGTTAACATTATACAAATTGCAGGATTTGGGAATAGTTTTGTTGGGTCTGTACCTATTTCTATAGGTAAATTAGGGTTTTTGAAATCTTTCGATTTTAGTCAGAATAAGTTATCTGGTATGATTCCTAGAGAGATTGGTAATTTAACAAATTTACAAAATCTTATCTTGTTTGAGAATTCATTGAGTGGAAAAATTCCTTCTGAGATTGGTCATTGTAGAAATCTTGTTTTTCTTGAGTTATATGAGAATGATTTCATTGGAAATATTCCTCATGAGTTAGGAAATTTAGTTCAATTACAAACATTGAGGTTATTTGATAATAAGTTGAATTCAACTATACCAGATTCTATATTTAAGTTGAAATCATTAACACATTTAGGATTATCAGAAAATAACTTAGAGGGAAAAATTTCTTCTGAGATTGGATCTTTGAGTTCTTTAAAAGTGTTAACTTTGCATTTAAATAAGTTTACCGGGACGATTCCTTCATCGGTAACAAATTTGAGAAACTTGACATCTCTTTCCATGAGTCAGAATCTTCTTTCTGGTGAAATTCCTTCAAACTTAGGCGTGCTTCGTAATTTGAAGTTTCTTGTCTTGAACAGCAATTTTTTACATGGTCCTGTTCCTCCTAGCATTGTCAATTGTACTAGTTTGTTAAATGTGAGTTTGTCTTTCAATGCTTTATCTGGGAAAATTCCCGAGGGTTTTTCAAAGCTACCGAATTTGACTTTTTTGTCTCTAGCTTCCAACAAAATGAGTGGTGAAATTCCAAATGATCTCTTTAACTGTTCAAACCTTAGTACTCTAAGTTTGGCGGAAAACAACTTCAGTGGATCGATAAAATCTGGTATCAAGAATCTGTTTAATCTCATGCGTTTGCAGCTGAATGTAAATGCTTTCGTAGGACCGATTCCACCAGAGATTGGAAACTTGAATAAACTCATCTCTTTGTCTCTTTCTGAAAATAGATTTTCAGGTCATATTCCAATAGAATTGTCAAAACTTTCTCTCCTTCAGGGACTTGGTCTTCATGACAATGTATTAGAAGGTACAATACCTGATAAACTTTCGGAACTAAAACAATTGACTAAACTTTTGCTCGATGAAAACAAGTTGGTTGGTCAAATACCGGATTCTATCTCAACTCTTGAGATGCTTTCATACTTGGATCTTCATGGAAACAAACTTAACGGTTCCATTCCGAAAAGCATGGGGAAGCTTGATCATCTTTTAATGTTGGATCTCTCTCATAACCAACTCACAGGATCGATTCCCGGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAATCACTTTGTTGGAAATGTTCCTTCTGAGTTGGGGATGTTGGACATGGTACAAGCAATTGATGTTTCAAACAATAATCTTTCAGGTGTCCTTCCAAAGACACTTGTGGGGTGCAGAAATATGTTTAGCCTTGATTTCTCAGGAAATAATATTTCAGGTCCTATTCCTGCTGAAATTTTTAGTGGTATGGACTTGCTTCAAAGCTTAAACCTTTCAAGAAATCATTTAGATGGTGAAATCCCTAAAAGCTTGTCACAGCTTAAGAATCTTAGTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAAGTATTCCTGAGGGATTTGCCAATCTTTCCAGCTTGATGCAGGTCAACTTTTCTTTCAATCAACTTGAAGGTCCTGTACCTTTGACCGGAATCTTTGCGCATATGAATGCATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCAAAATTCCTAAGGCCATGCAGAGAGAATCATCATTCTGTATCCAAGAAGGCCGTAGCTATCATTGCTGCCCTTGGATCTCTCGCTGTACTTCTACTTGTAGTGCTTCTGATTTTATATCTTAACCGAGGCACCATATTTGGTAATTCTGCAAAGACTAGTGATACTGAGAATCATGAATCAGTGCATGGTTCATCAGTGGGTCTTAAAAGATTCAGTCCAAAGGAATTAGAATATGCCACTGGTTGTTTCAGCTCAGACAACATCATCGGTGCTACCAGTTTGAGTACCGTTTACAAGGGTCAATTTGAAGATGGTCAGGTTGTAGCCGTAAAAAGCTTGAATTTGCGCCAATTCTCTGCAAATACCGACAAGATCTTCAAGAGAGAAGCCAGTACCTTGTGCCAGTTGAGACATAGGAATTTGGTGAAGATACTTGGATATGCTTGGGAAAGTCAGAAAATAAAGGCTTTAGTTTTAGAGTACATGGAAAATGGGAATTTGGATAGTGTCATACATGATAAAGAGATAGATCAGTCGAGGTGGACATTATCTGAAAGAGTCCGTGTTTTCATTTCTATCGCGAGTGGATTGGATTACTTGCACTCTGGCTATGGTTCTCCCATTGTCCACTGCGATCTAAAGCCTTCTAACATCCTTTTAGATAGAGATTTTGAAGCTCATGTCAGTGATTTTGGGACAGCTCGAATACTTGGTCTTCATCTGCAGGATGGCAGTGCCCTTTCCTCAACGGCAGCTTTGCAAGGCACAGTTGGTTATTTGGCACCAGAATTTGCATACATGAAGAAAGTAACGACTAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAATTTCTAACAAGAAAAAGGCCAACAGGGCTCTCAGAAGAGGATAGCTCGCTAATCAGTTTGCGTGATGTAGTGGCAAAAGCCGTTGCAAATGGAACGGAACAAATTATCAACATTGTGGACCCTGAATTGATCACAAAAGACAATGGAGAAGTGTTGGAAGAGCTCTTTAAGCTATCATTGTGCTGCACCTTCTCTGATCCTGAACATCGACCTAATATGAATGAAGTTTTATCTGCACTTGTAAAGCTTAAGACAGCAAGATAG 3492 0.3623 MLSLNLKLTIVILISILSIIVSHAQTKAKTTIEVEIEALKEFKKSITNDPNKILANWIDTKPHCNWSGIECNNQTSKHVISISLFELQLEGEISPFIGNISSLQLLDLTSNSFTGQIPPQISQCTQLTSLYLTDNSLSGSIPHELGNLKNLQFLDLSSNHFNGTLPNSIFNVTSLLGFAFNFNNLSGTIPSNVGNLVNIIQIAGFGNSFVGSVPISIGKLGFLKSFDFSQNKLSGMIPREIGNLTNLQNLILFENSLSGKIPSEIGHCRNLVFLELYENDFIGNIPHELGNLVQLQTLRLFDNKLNSTIPDSIFKLKSLTHLGLSENNLEGKISSEIGSLSSLKVLTLHLNKFTGTIPSSVTNLRNLTSLSMSQNLLSGEIPSNLGVLRNLKFLVLNSNFLHGPVPPSIVNCTSLLNVSLSFNALSGKIPEGFSKLPNLTFLSLASNKMSGEIPNDLFNCSNLSTLSLAENNFSGSIKSGIKNLFNLMRLQLNVNAFVGPIPPEIGNLNKLISLSLSENRFSGHIPIELSKLSLLQGLGLHDNVLEGTIPDKLSELKQLTKLLLDENKLVGQIPDSISTLEMLSYLDLHGNKLNGSIPKSMGKLDHLLMLDLSHNQLTGSIPGDVIAHFKDMQMYLNLSYNHFVGNVPSELGMLDMVQAIDVSNNNLSGVLPKTLVGCRNMFSLDFSGNNISGPIPAEIFSGMDLLQSLNLSRNHLDGEIPKSLSQLKNLSSLDLSQNNLKGSIPEGFANLSSLMQVNFSFNQLEGPVPLTGIFAHMNASSMMGNQALCGAKFLRPCRENHHSVSKKAVAIIAALGSLAVLLLVVLLILYLNRGTIFGNSAKTSDTENHESVHGSSVGLKRFSPKELEYATGCFSSDNIIGATSLSTVYKGQFEDGQVVAVKSLNLRQFSANTDKIFKREASTLCQLRHRNLVKILGYAWESQKIKALVLEYMENGNLDSVIHDKEIDQSRWTLSERVRVFISIASGLDYLHSGYGSPIVHCDLKPSNILLDRDFEAHVSDFGTARILGLHLQDGSALSSTAALQGTVGYLAPEFAYMKKVTTKVDVFSFGIIVMEFLTRKRPTGLSEEDSSLISLRDVVAKAVANGTEQIINIVDPELITKDNGEVLEELFKLSLCCTFSDPEHRPNMNEVLSALVKLKTAR 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04197 1163 ProSiteProfiles Protein kinase domain profile. 874 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04197 1163 SMART serkin_6 874 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04197 1163 Pfam Protein kinase domain 876 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g04197 1163 Gene3D Ribonuclease Inhibitor 32 200 IPR032675 -
Trre7g04197 1163 Gene3D Ribonuclease Inhibitor 201 362 IPR032675 -
Trre7g04197 1163 Gene3D Ribonuclease Inhibitor 479 630 IPR032675 -
Trre7g04197 1163 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 401 1154 - -
Trre7g04197 1163 SUPERFAMILY Protein kinase-like (PK-like) 849 1158 IPR011009 -
Trre7g04197 1163 SUPERFAMILY L domain-like 33 305 - -
Trre7g04197 1163 FunFam Leucine-rich repeat receptor protein kinase EMS1 408 493 - -
Trre7g04197 1163 SMART LRR_sd22_2 727 753 - -
Trre7g04197 1163 SMART LRR_sd22_2 604 625 - -
Trre7g04197 1163 SMART LRR_sd22_2 124 150 - -
Trre7g04197 1163 SMART LRR_sd22_2 364 387 - -
Trre7g04197 1163 SMART LRR_sd22_2 220 246 - -
Trre7g04197 1163 Gene3D Ribonuclease Inhibitor 368 478 IPR032675 -
Trre7g04197 1163 Gene3D Ribonuclease Inhibitor 631 806 IPR032675 -
Trre7g04197 1163 Gene3D Transferase(Phosphotransferase) domain 1 953 1163 - -
Trre7g04197 1163 CDD STKc_IRAK 880 1159 - -
Trre7g04197 1163 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 625 801 - -
Trre7g04197 1163 SMART LRR_typ_2 556 580 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 292 316 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 340 363 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 508 532 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 364 388 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 703 726 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 654 677 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 727 750 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 604 628 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 148 172 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 244 268 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 436 460 IPR003591 -
Trre7g04197 1163 SMART LRR_typ_2 100 124 IPR003591 -
Trre7g04197 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Trre7g04197 1163 PRINTS Leucine-rich repeat signature 727 740 - -
Trre7g04197 1163 PRINTS Leucine-rich repeat signature 607 620 - -
Trre7g04197 1163 Pfam Leucine rich repeat 658 716 IPR001611 GO:0005515
Trre7g04197 1163 Pfam Leucine rich repeat 558 617 IPR001611 GO:0005515
Trre7g04197 1163 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Trre7g04197 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 953 1163 - -
Trre7g04197 1163 FunFam Leucine-rich repeat receptor protein kinase EMS1 213 310 - -
Trre7g04197 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 837 952 - -
Trre7g04197 1163 SUPERFAMILY L domain-like 556 791 - -
Trre7g04197 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 32 189 - -
Trre7g04197 1163 SUPERFAMILY RNI-like 226 623 - -
Trre7g04197 1163 Gene3D Phosphorylase Kinase; domain 1 835 952 - -
Trre7g04197 1163 FunFam Leucine-rich receptor-like protein kinase family protein 311 407 - -
Trre7g04197 1163 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Trre7g04197 1163 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 526 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04197 Trre-Chr7 50097185 50100903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04197 28 1160 Receptor kinase-like Gene Family AT5G46330 54.116 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre7g04197 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04197 K13420 - gmx:100788119 1650.95