Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04186 ATGGAAAAGGAGCCACTGCTCCCATATTTCAGCCCAAGGAAGAAGCTTTCGCCATTATCACATCATCTTTTTCCTTTACCTGAAAATGATGAAATGGTTCTTCCTGTTACACCTTCTGAGTTCAAAGATCGTCTCATTTTTGGTCCTACACCAGTTGATCCTGATGTTTTAACACTTTCACGTAATTCACCAAAATCTTCTTGTTCTTCTTCACAAGATTTTGTTGATTCTTCATCACAGCACTCTCAAACTTCTTGGCTTATTGATCCTAATTATCCAAGGGGTAAAACAAATCTTCATCGTTCCAAAACTGCACCTGCTATGGCTGTTATTAGTGATTTCAATCATCGTGAATCTGTTAAAAGACCTCAATTTGGTAGCCAATCTATTGTTCATCAAGCTGTTATTCTTCTTGTTCTTTATTTGGCTTTAGGGGTTGTTATTTATTGGTTCAATCGTAATAATTTTACAGCAACAGAAACTCATGTTATAGTAGATGCATTGTATTTTTGTATAGTTACAATGTGCACAATAGGTTATGGTGATATTACACCTAATAGTACTGCAACCAAGATTTTCTCTATATTATTTGTGTTGATTGGTTTTGGTTTTATTGATATATTGCTTAGTGGAATGGTTAGTTATGTTCTTGATTTGCAAGAAAATCATTTGTTGAGGGCGGTGAAGGGAAGGGGTGGGAAAGATGGTAGGTCATATTTAGTTGATGTCAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCATTGGCACTTTTGGTTGTGGTACTTTGTATTGGACTTGGTGTTGCGGTTATGCATTTTGTCGAAAGGCTTGGATGGGTGGATTCTTTTTATCTTTCGGTTATGTCTGTTACAACGGTTGGATATGGCGATCATGCTTTTAAGACCATGCATGGTCGTATTTTTGCTGCAATTTGGTTGCTTGTGTCAACGCTTGCGGTCGCCCGAGCATTCCTTTATTTGGCTGAGGCGAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGCCAGGATATGACTGTTGCTGAGTTTCTTGCTGCTGACATAGACAATAATGGATTTGTGAGTAAATCAGAATACGTTATATACAAGCTCAAGGAGATGGGAAAAGTGACAGAGAAAGACATCATGCAGAATGGAATGCCAGATTCTCAAGTTGCATAG 1194 0.3869 MEKEPLLPYFSPRKKLSPLSHHLFPLPENDEMVLPVTPSEFKDRLIFGPTPVDPDVLTLSRNSPKSSCSSSQDFVDSSSQHSQTSWLIDPNYPRGKTNLHRSKTAPAMAVISDFNHRESVKRPQFGSQSIVHQAVILLVLYLALGVVIYWFNRNNFTATETHVIVDALYFCIVTMCTIGYGDITPNSTATKIFSILFVLIGFGFIDILLSGMVSYVLDLQENHLLRAVKGRGGKDGRSYLVDVKKGRMRIRMKVALALLVVVLCIGLGVAVMHFVERLGWVDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVTEKDIMQNGMPDSQVA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04186 397 FunFam Two-pore potassium channel 5 119 229 - -
Trre7g04186 397 FunFam Two-pore potassium channel 3 237 351 - -
Trre7g04186 397 MobiDBLite consensus disorder prediction 59 90 - -
Trre7g04186 397 Pfam Ion channel 258 329 IPR013099 -
Trre7g04186 397 Pfam Ion channel 136 216 IPR013099 -
Trre7g04186 397 Gene3D - 240 349 - -
Trre7g04186 397 Gene3D - 112 230 - -
Trre7g04186 397 SUPERFAMILY Voltage-gated potassium channels 244 351 - -
Trre7g04186 397 ProSitePatterns EF-hand calcium-binding domain. 358 370 IPR018247 -
Trre7g04186 397 PRINTS Two pore domain K+ channel signature 173 201 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre7g04186 397 PRINTS Two pore domain K+ channel signature 292 301 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre7g04186 397 SUPERFAMILY Voltage-gated potassium channels 128 216 - -
Trre7g04186 397 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 135 388 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04186 Trre-Chr7 50002695 50006833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04186 4 387 Ion Channels AT4G18160 61.125 7.29e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04186 K05389 - gmx:100804249 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04186 7 50002695 50006833 Trre7g04186 7 50002695 50006833 ECH