Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04136 ATGTGTATTCTTGTCGAATTTGATCTGGTATTTTCGCTATCTGTGGCTGAAATGGGAAATCTAATAAGCCTTGGTCCAAGGGAGTCTTATGAATTTTTTCATGATCCTTTTATTGGAAAAAGTGATGAAGATAAAGTGAGAAAATATTTGAAGGTGGAGCCACTTCACGACCGTTCTGGTCACATGTTTAACATAAGTGTTCAAAACGAGCTTGAGAACATAAACGAAAACATATCAATTCCTGTCACAAAAGGAGAATTTGCAGTTTTCGATTCACTTTTCAATGTTGGACTGCCTTTGCCAACTCCATAA 312 0.3654 MCILVEFDLVFSLSVAEMGNLISLGPRESYEFFHDPFIGKSDEDKVRKYLKVEPLHDRSGHMFNISVQNELENINENISIPVTKGEFAVFDSLFNVGLPLPTP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04136 103 Gene3D Transcriptional Coactivator Pc4; Chain A 6 100 IPR009044 GO:0003677|GO:0006355
Trre7g04136 103 SUPERFAMILY ssDNA-binding transcriptional regulator domain 9 99 IPR009044 GO:0003677|GO:0006355
Trre7g04136 103 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 10 99 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre7g04136 103 Pfam Whirly transcription factor 10 92 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04136 Trre-Chr7 49574466 49575943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04136 10 99 Whirly Transcription Factor Family AT1G14410 71.111 4.57e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre7g04136 Whirly 1.2e-30 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04136 K26559 - pcin:129310571 121.709