Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04131 ATGGTGACATTCTCGGTCGGTGGTTCCGACGACGGTGAAGGACCTAGCAACGCAAACCAGAAGCGCCGAAGGGTTGACGACGGAGGAGAAATAGCACCAACAACCACAGATGAAGAAGAAAATCAACAATCATCACAAGAAGGGTTCGAAATGGAAAATTCCCCCATTGGAACCCTAGAAAACGACACAGATGAAGGAAACTCTTATGGATCTTACTCAGGACAAGCTAATGACATGTGTAAGAGCGTTTCTGCAGTCATTTCTGATCCTGATGTTCTTGATTGCTTCATTTGTTCTGAACCATTGTCAATTCCTATATATCAGTGTGAGAATGGTCATATTGCTTGCTCTAAGTGTTGCGGCGAACTTAGGAACAAATGTCCCATGTGCTTAATGCCCATTGGGTACAATCGTTGCCGGGCTGTGGAGAAGTTGCTTGAATCTATTAAAATATCATGCCCAAATGCAAATTATGGCTGTAAAGAAATGTTTAGTTGCAATATGAAAAGTAGCCACGAGAAGGAATGCCTATATACGCCATGTAAATGCCCACACACAGGTTGCGGCTTTCTTGCCTCGTCCAAGGAGTTAGCTCTCCACTTCAGCTATAGGCATGTAGGCTTTGGAATACAGTTTAGATATGGCAAATACATATCTGTCTCGTTAAATACTTGTCAGAAAGAAATTGTTCTTATAGATCAAAATGACGCAACACTATTTGTTGTTCACAATAACCTTAAGGAATTGGGAAATGTGGTCTATATTAGTTGTCTTGGTCCCAAAGCGATGGCGGGTTTTGATTATGTTGTCAAGGCTAAGTCTCATGCAACCAAATTGAAACTGCAAACTACTGTGAATACCATTCAAGACAATAATGGTGGTGCTCCTACAACCAATTTTCTTTTGATTCCTTCAGATTATTTTGGATTTGGACCACTCAAATTGGATATTCTTATAAAGTCTCACTAA 969 0.4066 MVTFSVGGSDDGEGPSNANQKRRRVDDGGEIAPTTTDEEENQQSSQEGFEMENSPIGTLENDTDEGNSYGSYSGQANDMCKSVSAVISDPDVLDCFICSEPLSIPIYQCENGHIACSKCCGELRNKCPMCLMPIGYNRCRAVEKLLESIKISCPNANYGCKEMFSCNMKSSHEKECLYTPCKCPHTGCGFLASSKELALHFSYRHVGFGIQFRYGKYISVSLNTCQKEIVLIDQNDATLFVVHNNLKELGNVVYISCLGPKAMAGFDYVVKAKSHATKLKLQTTVNTIQDNNGGAPTTNFLLIPSDYFGFGPLKLDILIKSH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04131 322 CDD RING-HC_SIAHs 93 130 - -
Trre7g04131 322 MobiDBLite consensus disorder prediction 1 15 - -
Trre7g04131 322 MobiDBLite consensus disorder prediction 1 68 - -
Trre7g04131 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 201 IPR013083 -
Trre7g04131 322 Pfam Seven in absentia protein family 138 292 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre7g04131 322 SUPERFAMILY TRAF domain-like 148 319 - -
Trre7g04131 322 ProSiteProfiles Zinc finger SIAH-type profile. 148 206 IPR013010 GO:0008270
Trre7g04131 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 37 321 IPR044286 -
Trre7g04131 322 MobiDBLite consensus disorder prediction 35 68 - -
Trre7g04131 322 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04131 Trre-Chr7 49524819 49529022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04131 91 306 C3H Transcription Factor Family AT2G41980 26.638 2.82e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04131 K04506 - gmx:100778869 370.933