Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04113 ATGTCTCATCGGAAATTCGAGCACCCTAGACACGGTTCTCTCGGTTTTCTCCCAAGAAAACGAGCTTCACGTCATCGTGGAAAAGTGAAAGCCTTTCCAAAAGATGATCCCACCAAACCATGCAGGTTGACTGCTTTTGTTGGCTACAAGTCTGGGATGACCCATATAGTTAGGGAGGTCGAGAAACCTGGATCAAAGCTTCACAATAAGGAGACATGTGAAGCTGTCACTATCATTGAAACTCCCCCAGTTGTTGTTATTGGAGTGGTGGGATATGTCAAGACACCACGAGGCCTTCGCACACTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGATATCAAGCGCCGGTTTTACAAGAACTGGTGCAAATCAAAGAAGAAAGCTTTTACCAAATATACCAAAAAATATGAAACAGACGAAGGAAAGAAAGATATCCAATCTCAGCTTGAGAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAATCAAAAGAAAGCTCATTTGATGGAGATCCAAGTTAATGGTGGAACAATAAGCCAGAAGGTGGACTATGCATATGGTTTCTTTGAAAAGCAAATCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATAGATATCATTGGAGTGACTAAAGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGCGTCACTCGCCTTCCACGAAAGACACACAGAGGTCTCAGGAAGGTTGCTTGTATTGGTGCATGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGGCAGAATGGATATCATCATCGTACTGAGTTGAATAAGAAGATCTACAAGGTTGGGAAGACTGACCAAGAGTCACATACAGCCATCACTGAATTCGACAGGACTGAGAAGGATATTACTCCTATGGGTGGATTTCCTCATTATGGTATTGTGAACCATGATTATCTTATGATCAAGGGATGCTGTGTTGGTCCAAAGAAGCGGGTTGTCACTCTTCGTCAGTCACTACTCAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAAACTGAAGTTCATTGACACCTCCTCCAAATTTGGACATGGCCGCTTCCAGACTACCCAAGAGAAACAAAAGTTTTATGGTCGGTTGAAGGCGTAA 1170 0.4333 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTAFVGYKSGMTHIVREVEKPGSKLHNKETCEAVTIIETPPVVVIGVVGYVKTPRGLRTLNTVWAQHLSEDIKRRFYKNWCKSKKKAFTKYTKKYETDEGKKDIQSQLEKLKKYATVIRVLAHTQIRKLKGLNQKKAHLMEIQVNGGTISQKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKDITPMGGFPHYGIVNHDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04113 389 FunFam 60S ribosomal protein L3 1 74 - -
Trre7g04113 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Trre7g04113 389 Gene3D Translation factors 44 385 - -
Trre7g04113 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trre7g04113 389 FunFam Ribosomal protein L3 265 389 - -
Trre7g04113 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Trre7g04113 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trre7g04113 389 FunFam 60S ribosomal protein L3 83 207 - -
Trre7g04113 389 FunFam 60S ribosomal protein L3 44 159 - -
Trre7g04113 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Trre7g04113 389 Gene3D - 83 207 - -
Trre7g04113 389 MobiDBLite consensus disorder prediction 1 35 - -
Trre7g04113 389 FunFam 60S ribosomal protein L3 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04113 Trre-Chr7 49359854 49363940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04113 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.528 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04113 K02925 - gmx:100792174 726.857