Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g04105 | ATGGCCAAAAACATCCTCAAAACTCCATCACTTCTTCAGTACATACTTGAAACAAGCTCATACCCAAAAGAACATGAACAATTGAAGCTACTTAGAGAGACAACAATCCAGAAATACGGGAAATTGAGTATGATGAATGTGCCTTTGGATGAAGCACAATTCATATCTATGTTTTTGAAAATCATGAATGCAAAGAAAACATTAGAAATTGGAGTCTTCACTGGTTATTCTCTTCTTACTACAGCTCTTGCTCTTCCTCCTAATGGCAAGATAATAGCAATTGATATGAATAGAGAAGCCTATGAGACAGGATTGCCTTTCATTCAGAAGGCTGAAGTTGACCACAAAATTGACTTTATCCAAAGTGATGCATTATCAGCTATCAATGGTCTTATTGATGGAAAACATGAAGAATCATTTGATTATGCATTTGTGGATGCTGACAAAGAAAACTTCATAAAGTATCATGAGCTGTTATTGAAATTGGTGAGGAAAGGTGGAATAATTGCTTATGACAATACATTGTGGTCTGGTTCTGTGGCCATGTCTGAGGATGAAGAAAGGGAAGATATGATAAGAAGAAAAAGAAATATTGCAATTGAATTCAACAACTATATTGCAAATGATACTCGCATTGAATCGACAATCCTTTCTATTGGGGATGGTGTAACTCTCTGTCGACTTCTCTAA | 690 | 0.3565 | MAKNILKTPSLLQYILETSSYPKEHEQLKLLRETTIQKYGKLSMMNVPLDEAQFISMFLKIMNAKKTLEIGVFTGYSLLTTALALPPNGKIIAIDMNREAYETGLPFIQKAEVDHKIDFIQSDALSAINGLIDGKHEESFDYAFVDADKENFIKYHELLLKLVRKGGIIAYDNTLWSGSVAMSEDEEREDMIRRKRNIAIEFNNYIANDTRIESTILSIGDGVTLCRLL | 229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g04105 | 229 | Gene3D | Vaccinia Virus protein VP39 | 1 | 228 | IPR029063 | - | |
| Trre7g04105 | 229 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 8 | 227 | IPR029063 | - | |
| Trre7g04105 | 229 | Pfam | O-methyltransferase | 17 | 227 | IPR002935 | GO:0008171 | |
| Trre7g04105 | 229 | CDD | AdoMet_MTases | 68 | 171 | - | - | |
| Trre7g04105 | 229 | PANTHER | O-METHYLTRANSFERASE-RELATED | 3 | 227 | - | - | |
| Trre7g04105 | 229 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 4 | 229 | IPR002935 | GO:0008171 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g04105 | Trre-Chr7 | 49263534 | 49265409 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g04105 | 3 | 229 | Monolignol Biosynthesis Gene Families | AT1G67990 | 57.269 | 4.89e-90 | 263 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g04105 | K00588 | K13272 | gmx:100813350 | 347.821 |