Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04088 ATGGCCTCTCAAATTGGAGCAAAAACTAATGGAATTTCACCAAACAGTTTTCAAATAGAGATTCCTATTCATACCAAAAGTGTTGAAAAAGAGAGCAACATTGACTACTTTCAAAGGGCACAGTGGCTTAGAGCAGCCATGTTAGGAGCCAATGATGGATTAATCACTGTTGCCTCATTGATGATTGGTATTGGAGCAATAAAAGAAGATATAAATGTAATGCTCCTTGCTGGTTTCGCCGGTTTAGTAGCCGGTGCTTGTAGCATGGCGATTGGTGAGTTTGTTTCTGTTTATACTCAATATGACATTGAGATAGCTCAAATTAAAAGAGAATTAGAAAATAATGATGATGATGAAAGTAGTATTGAAAGAGAGAAATTGCCAAATCCATTTCAAGCAGCAGTAGCATCAGCACTTGCATTTTCTGTTGGTGCTCTAATGCCATTGTTAGCAGCTGCATTTATAAAGAATCATAAGATTAGAATGGGTGTTGTTGCTGCTGTGGTTAGTTTTGCATTGTTGGTGTTTGGATCAATGGGAGCATTCATTGGTAAAACTCCAGTTATGAGGTCTTGTGTTAGAGTTCTTATCGGTGGTTGGATGGCTATGGCTATTACTTTTGGTGTCACCAAATTGATTGGCACAACTGGACTTTGA 657 0.382 MASQIGAKTNGISPNSFQIEIPIHTKSVEKESNIDYFQRAQWLRAAMLGANDGLITVASLMIGIGAIKEDINVMLLAGFAGLVAGACSMAIGEFVSVYTQYDIEIAQIKRELENNDDDESSIEREKLPNPFQAAVASALAFSVGALMPLLAAAFIKNHKIRMGVVAAVVSFALLVFGSMGAFIGKTPVMRSCVRVLIGGWMAMAITFGVTKLIGTTGL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04088 218 Coils Coil 105 125 - -
Trre7g04088 218 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 24 213 IPR008217 GO:0005384|GO:0030026
Trre7g04088 218 CDD Nodulin-21 41 187 - -
Trre7g04088 218 Pfam VIT family 43 125 IPR008217 GO:0005384|GO:0030026
Trre7g04088 218 Pfam VIT family 122 210 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04088 Trre-Chr7 49141041 49141697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04088 29 218 Nodulin-like Gene Family AT3G43660 64.737 2.92e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04088 K22736 - gmx:100802489 302.753